ENSG00000164808

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000297423 ENSG00000164808 No_inf pgKDN_inf SPIDR protein_coding protein_coding 22.78691 25.05422 27.6238 7.690354 9.097392 0.1408046 3.9039080 2.2954678 5.0408038 1.4011608 1.6345422 1.1314535 0.23535000 0.137525 0.238650 0.101125 0.7053004988 0.0003060213 FALSE  
ENST00000518711 ENSG00000164808 No_inf pgKDN_inf SPIDR protein_coding retained_intron 22.78691 25.05422 27.6238 7.690354 9.097392 0.1408046 0.7389966 1.8858322 0.0000000 0.2869091 0.0000000 -7.5666875 0.03547500 0.085175 0.000000 -0.085175 0.0003060213 0.0003060213    
ENST00000522321 ENSG00000164808 No_inf pgKDN_inf SPIDR protein_coding protein_coding_CDS_not_defined 22.78691 25.05422 27.6238 7.690354 9.097392 0.1408046 0.4244631 1.2733893 0.0000000 1.2733893 0.0000000 -7.0038151 0.02245833 0.067375 0.000000 -0.067375 0.8580457484 0.0003060213 FALSE  
ENST00000524141 ENSG00000164808 No_inf pgKDN_inf SPIDR protein_coding retained_intron 22.78691 25.05422 27.6238 7.690354 9.097392 0.1408046 0.6887983 0.0000000 2.0663950 0.0000000 1.2422322 7.6979371 0.02982500 0.000000 0.089475 0.089475 0.4742781720 0.0003060213 FALSE  
ENST00000524157 ENSG00000164808 No_inf pgKDN_inf SPIDR protein_coding protein_coding_CDS_not_defined 22.78691 25.05422 27.6238 7.690354 9.097392 0.1408046 6.1867748 6.5153998 12.0449245 6.5153998 8.0024005 0.8854844 0.14111667 0.135650 0.287700 0.152050 0.8358632042 0.0003060213    
ENST00000588781 ENSG00000164808 No_inf pgKDN_inf SPIDR protein_coding protein_coding_CDS_not_defined 22.78691 25.05422 27.6238 7.690354 9.097392 0.1408046 0.6069872 1.3032194 0.0000000 0.2863166 0.0000000 -7.0369642 0.03363333 0.059700 0.000000 -0.059700 0.0065348642 0.0003060213    
MSTRG.27633.17 ENSG00000164808 No_inf pgKDN_inf SPIDR protein_coding   22.78691 25.05422 27.6238 7.690354 9.097392 0.1408046 1.4538258 0.8508256 0.7394207 0.5074478 0.7394207 -0.1999453 0.07324167 0.030100 0.043525 0.013425 0.8338398470 0.0003060213 FALSE  
MSTRG.27633.18 ENSG00000164808 No_inf pgKDN_inf SPIDR protein_coding   22.78691 25.05422 27.6238 7.690354 9.097392 0.1408046 0.4911295 1.4733886 0.0000000 1.4733886 0.0000000 -7.2127528 0.02775000 0.083250 0.000000 -0.083250 0.8621226219 0.0003060213 FALSE  
MSTRG.27633.9 ENSG00000164808 No_inf pgKDN_inf SPIDR protein_coding   22.78691 25.05422 27.6238 7.690354 9.097392 0.1408046 3.4373681 5.5086735 1.6852777 0.6149994 0.9771138 -1.7027999 0.19820833 0.279425 0.095425 -0.184000 0.4293409467 0.0003060213 TRUE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000164808 E001 0.0000000       8 47260878 47260912 35 +      
ENSG00000164808 E002 0.1186381 0.0117987641 0.460579523   8 47260913 47260930 18 + 0.102 0.000 -10.087
ENSG00000164808 E003 0.1186381 0.0117987641 0.460579523   8 47260931 47260935 5 + 0.102 0.000 -12.683
ENSG00000164808 E004 0.2454921 0.0163234476 0.905606367   8 47260936 47260937 2 + 0.102 0.089 -0.228
ENSG00000164808 E005 0.3641302 0.1322539424 0.523612643   8 47260938 47260941 4 + 0.185 0.089 -1.229
ENSG00000164808 E006 0.3641302 0.1322539424 0.523612643   8 47260942 47260952 11 + 0.185 0.089 -1.229
ENSG00000164808 E007 0.4817608 0.0195475951 0.252317670   8 47260953 47260954 2 + 0.254 0.089 -1.813
ENSG00000164808 E008 0.4817608 0.0195475951 0.252317670   8 47260955 47260955 1 + 0.254 0.089 -1.813
ENSG00000164808 E009 0.8439750 0.0125819063 0.180443082 0.45591761 8 47260956 47260964 9 + 0.366 0.162 -1.550
ENSG00000164808 E010 1.5765219 0.0087378607 0.273261637 0.56702421 8 47260965 47260991 27 + 0.494 0.329 -0.906
ENSG00000164808 E011 0.0000000       8 47276833 47277071 239 +      
ENSG00000164808 E012 0.0000000       8 47279270 47279436 167 +      
ENSG00000164808 E013 1.4578838 0.0095538460 0.405954649 0.68864434 8 47279862 47279863 2 + 0.455 0.329 -0.713
ENSG00000164808 E014 1.9659904 0.0077003692 0.845361269 0.94508247 8 47279864 47279879 16 + 0.455 0.482 0.135
ENSG00000164808 E015 4.6074604 0.0807228754 0.220353604 0.50725815 8 47279880 47279980 101 + 0.850 0.643 -0.843
ENSG00000164808 E016 3.3710804 0.0862870210 0.030352685 0.16393368 8 47279981 47280017 37 + 0.799 0.449 -1.550
ENSG00000164808 E017 3.7309687 0.0842873941 0.025584221 0.14759433 8 47284028 47284053 26 + 0.834 0.482 -1.517
ENSG00000164808 E018 5.3647073 0.0028861723 0.269993838 0.56362624 8 47284054 47284094 41 + 0.867 0.742 -0.491
ENSG00000164808 E019 4.1329959 0.0055798359 0.146202959 0.40715188 8 47291033 47291052 20 + 0.799 0.620 -0.743
ENSG00000164808 E020 7.7379359 0.0018495920 0.980619399 0.99786484 8 47291053 47291137 85 + 0.939 0.939 0.001
ENSG00000164808 E021 10.9463975 0.0129511500 0.842809504 0.94376700 8 47293867 47294030 164 + 1.064 1.082 0.065
ENSG00000164808 E022 0.3623976 0.1719701505 0.529539995   8 47294031 47294428 398 + 0.185 0.089 -1.228
ENSG00000164808 E023 0.1272623 0.0123320129 0.627657821   8 47330780 47330895 116 + 0.000 0.089 11.411
ENSG00000164808 E024 0.0000000       8 47360819 47360949 131 +      
ENSG00000164808 E025 0.4896324 0.0157392535 0.880102299   8 47388341 47388484 144 + 0.185 0.162 -0.228
ENSG00000164808 E026 0.2539903 0.0160436232 0.300024674   8 47388491 47388533 43 + 0.000 0.162 12.326
ENSG00000164808 E027 20.2495547 0.0008733204 0.024007294 0.14189832 8 47396376 47396626 251 + 1.400 1.254 -0.507
ENSG00000164808 E028 10.7283345 0.0013485006 0.073760414 0.27655156 8 47407861 47407961 101 + 1.145 0.992 -0.557
ENSG00000164808 E029 0.0000000       8 47407962 47408006 45 +      
ENSG00000164808 E030 0.3611443 0.1395992412 0.528196460   8 47419103 47419226 124 + 0.185 0.089 -1.227
ENSG00000164808 E031 0.3539644 0.0417264090 0.079342035   8 47419227 47419264 38 + 0.254 0.000 -14.019
ENSG00000164808 E032 0.0000000       8 47419265 47419268 4 +      
ENSG00000164808 E033 9.3122315 0.0015717238 0.660551935 0.85830577 8 47440323 47440400 78 + 1.033 0.992 -0.152
ENSG00000164808 E034 15.5910971 0.0043701127 0.902825969 0.96886466 8 47440401 47440542 142 + 1.214 1.220 0.023
ENSG00000164808 E035 0.6270271 0.0149947476 0.231308936 0.51985186 8 47483335 47483373 39 + 0.102 0.280 1.772
ENSG00000164808 E036 15.7012442 0.0009112843 0.021927214 0.13445380 8 47595811 47596006 196 + 1.120 1.286 0.588
ENSG00000164808 E037 17.8509729 0.0011869554 0.109306741 0.34702134 8 47598946 47599196 251 + 1.330 1.220 -0.386
ENSG00000164808 E038 0.0000000       8 47654088 47654149 62 +      
ENSG00000164808 E039 0.1265070 0.0122981731 0.627576706   8 47659664 47659690 27 + 0.000 0.089 11.411
ENSG00000164808 E040 0.2357071 0.0156972432 0.193841331   8 47660445 47660514 70 + 0.185 0.000 -13.579
ENSG00000164808 E041 0.2357071 0.0156972432 0.193841331   8 47660918 47661003 86 + 0.185 0.000 -13.579
ENSG00000164808 E042 0.0000000       8 47673533 47673800 268 +      
ENSG00000164808 E043 14.4721481 0.0024739799 0.642159124 0.84821676 8 47673801 47673941 141 + 1.207 1.170 -0.130
ENSG00000164808 E044 0.0000000       8 47688442 47688542 101 +      
ENSG00000164808 E045 0.0000000       8 47697756 47697933 178 +      
ENSG00000164808 E046 5.8243222 0.0040056870 0.096965589 0.32438544 8 47700403 47700407 5 + 0.719 0.904 0.726
ENSG00000164808 E047 12.4343459 0.0137254683 0.660427331 0.85830178 8 47700408 47700490 83 + 1.102 1.143 0.145
ENSG00000164808 E048 16.4166003 0.0367493777 0.468679223 0.73685309 8 47701721 47701864 144 + 1.273 1.208 -0.228
ENSG00000164808 E049 6.8822208 0.0319117912 0.964188834 0.99243894 8 47701956 47702015 60 + 0.897 0.891 -0.022
ENSG00000164808 E050 18.2566945 0.0007979272 0.485964317 0.74977828 8 47712662 47712872 211 + 1.308 1.260 -0.170
ENSG00000164808 E051 18.2637274 0.0032725243 0.136086069 0.39230670 8 47712873 47713446 574 + 1.221 1.325 0.365
ENSG00000164808 E052 2.4501139 0.0102706823 0.735885116 0.89521209 8 47713447 47713488 42 + 0.562 0.513 -0.228
ENSG00000164808 E053 15.3827367 0.0012551720 0.502269705 0.76203027 8 47713489 47713641 153 + 1.185 1.232 0.167
ENSG00000164808 E054 0.0000000       8 47713642 47713644 3 +      
ENSG00000164808 E055 0.1271363 0.0123379881 0.627576282   8 47727196 47727199 4 + 0.000 0.089 11.411
ENSG00000164808 E056 9.2461144 0.0016128669 0.281230005 0.57452735 8 47727200 47727252 53 + 0.952 1.048 0.357
ENSG00000164808 E057 10.2149062 0.0016453691 0.461462610 0.73218576 8 47727253 47727293 41 + 1.012 1.074 0.228
ENSG00000164808 E058 0.2533610 0.0160301279 0.300028720   8 47728720 47728932 213 + 0.000 0.162 12.326
ENSG00000164808 E059 15.6068866 0.0009193403 0.766524346 0.90938880 8 47728933 47729047 115 + 1.207 1.226 0.068
ENSG00000164808 E060 0.3713386 0.1891310932 0.719975131   8 47729048 47729102 55 + 0.102 0.162 0.772
ENSG00000164808 E061 10.6771717 0.0184964117 0.896084581 0.96583516 8 47729412 47729465 54 + 1.074 1.057 -0.062
ENSG00000164808 E062 1.7689274 0.0079642535 0.001391937 0.01930386 8 47729466 47729704 239 + 0.102 0.596 3.472
ENSG00000164808 E063 1.3663702 0.2128307604 0.410170997 0.69214671 8 47732129 47732193 65 + 0.254 0.448 1.186
ENSG00000164808 E064 1.8611586 0.0074307576 0.318080302 0.61082203 8 47732559 47732701 143 + 0.366 0.513 0.772
ENSG00000164808 E065 52.3541440 0.0028003965 0.003334374 0.03738019 8 47735307 47736314 1008 + 1.650 1.775 0.422

Help

Please Click HERE to learn more details about the results from DEXseq.