ENSG00000164830

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000312046 ENSG00000164830 No_inf pgKDN_inf OXR1 protein_coding protein_coding 41.89632 41.18651 37.96874 14.7693 2.120935 -0.1173301 2.590267 3.207319 2.334380 0.1400728 1.1053381 -0.45665276 0.07437500 0.102025 0.064200 -0.037825 0.79152577 0.02340893 FALSE  
ENST00000517566 ENSG00000164830 No_inf pgKDN_inf OXR1 protein_coding protein_coding 41.89632 41.18651 37.96874 14.7693 2.120935 -0.1173301 4.483176 3.609734 7.668904 0.3498072 1.6321037 1.08501671 0.12648333 0.117600 0.206725 0.089125 0.70576202 0.02340893 FALSE  
ENST00000521369 ENSG00000164830 No_inf pgKDN_inf OXR1 protein_coding protein_coding_CDS_not_defined 41.89632 41.18651 37.96874 14.7693 2.120935 -0.1173301 1.814309 0.000000 2.472852 0.0000000 0.9194201 7.95585423 0.05329167 0.000000 0.067950 0.067950 0.04279516 0.02340893 FALSE  
ENST00000577661 ENSG00000164830 No_inf pgKDN_inf OXR1 protein_coding protein_coding_CDS_not_defined 41.89632 41.18651 37.96874 14.7693 2.120935 -0.1173301 5.133232 5.845846 5.976406 2.0174185 1.7193999 0.03181249 0.14899167 0.176550 0.164175 -0.012375 0.97446532 0.02340893    
ENST00000661818 ENSG00000164830 No_inf pgKDN_inf OXR1 protein_coding protein_coding_CDS_not_defined 41.89632 41.18651 37.96874 14.7693 2.120935 -0.1173301 3.380884 2.192058 4.804694 2.1920578 2.7751109 1.12859194 0.09064167 0.079975 0.118075 0.038100 0.80251902 0.02340893 FALSE  
MSTRG.28097.17 ENSG00000164830 No_inf pgKDN_inf OXR1 protein_coding   41.89632 41.18651 37.96874 14.7693 2.120935 -0.1173301 2.108570 0.000000 3.759329 0.0000000 1.3087404 8.55816398 0.05031667 0.000000 0.099850 0.099850 0.02340893 0.02340893 FALSE  
MSTRG.28097.21 ENSG00000164830 No_inf pgKDN_inf OXR1 protein_coding   41.89632 41.18651 37.96874 14.7693 2.120935 -0.1173301 4.505400 6.456945 4.882981 1.1138225 1.6325528 -0.40237068 0.13360833 0.210425 0.123175 -0.087250 0.82900515 0.02340893 FALSE  
MSTRG.28097.8 ENSG00000164830 No_inf pgKDN_inf OXR1 protein_coding   41.89632 41.18651 37.96874 14.7693 2.120935 -0.1173301 9.974496 14.949875 0.000000 14.9498750 0.0000000 -10.54688241 0.11393333 0.175025 0.000000 -0.175025 0.88750514 0.02340893    
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000164830 E001 0.4719109 0.0158916081 8.110674e-02   8 106270144 106270189 46 + 0.270 0.000 -11.807
ENSG00000164830 E002 1.1941968 0.0117911141 1.228710e-01 0.371016253 8 106270190 106270214 25 + 0.435 0.192 -1.629
ENSG00000164830 E003 1.5574496 0.0088409904 1.294478e-01 0.381677089 8 106270215 106270222 8 + 0.499 0.264 -1.366
ENSG00000164830 E004 1.7920842 0.0088976930 5.890127e-02 0.243360764 8 106270223 106270235 13 + 0.554 0.264 -1.629
ENSG00000164830 E005 2.8903969 0.0055881196 1.553286e-01 0.421212413 8 106270236 106270289 54 + 0.668 0.470 -0.909
ENSG00000164830 E006 1.8148382 0.0083191678 4.296078e-01 0.707801762 8 106270290 106270290 1 + 0.499 0.379 -0.629
ENSG00000164830 E007 2.7845598 0.0053710425 4.028559e-01 0.685911746 8 106270291 106270367 77 + 0.626 0.509 -0.536
ENSG00000164830 E008 4.8145655 0.0132977147 3.252254e-02 0.170864457 8 106271705 106271805 101 + 0.626 0.885 1.049
ENSG00000164830 E009 2.9462599 0.0055932163 2.987322e-01 0.591715555 8 106271806 106271808 3 + 0.527 0.664 0.612
ENSG00000164830 E010 60.6502578 0.0087087129 1.303515e-01 0.382980626 8 106271809 106272902 1094 + 1.823 1.743 -0.270
ENSG00000164830 E011 0.7333919 0.0617165908 7.547408e-01 0.903517903 8 106359476 106359480 5 + 0.216 0.264 0.371
ENSG00000164830 E012 5.8290345 0.0024536075 4.068660e-01 0.689468997 8 106359481 106359636 156 + 0.873 0.779 -0.366
ENSG00000164830 E013 0.1265070 0.0123332613 4.114419e-01   8 106394859 106394873 15 + 0.000 0.107 11.772
ENSG00000164830 E014 0.0000000       8 106447924 106448048 125 +      
ENSG00000164830 E015 10.2491681 0.0014586755 7.988055e-03 0.069076123 8 106518943 106519139 197 + 1.143 0.901 -0.892
ENSG00000164830 E016 0.2362687 0.0157073001 3.465930e-01   8 106580974 106581003 30 + 0.155 0.000 -13.179
ENSG00000164830 E017 0.4822993 0.0315388821 4.653467e-01   8 106581004 106581251 248 + 0.216 0.107 -1.214
ENSG00000164830 E018 0.3723461 0.1931117353 4.822985e-01   8 106604782 106605204 423 + 0.085 0.192 1.370
ENSG00000164830 E019 0.1170040 0.0117004954 6.994047e-01   8 106618126 106618183 58 + 0.085 0.000 -12.258
ENSG00000164830 E020 0.6258013 0.0487441682 1.061578e-01 0.341027827 8 106657668 106657853 186 + 0.085 0.325 2.371
ENSG00000164830 E021 0.3627784 0.0166197353 7.603343e-01   8 106657854 106657890 37 + 0.155 0.107 -0.629
ENSG00000164830 E022 2.3588844 0.0060320816 3.005896e-02 0.163131417 8 106657891 106658085 195 + 0.360 0.664 1.486
ENSG00000164830 E023 2.4734641 0.0059905022 5.530993e-02 0.234356105 8 106658086 106658185 100 + 0.399 0.664 1.264
ENSG00000164830 E024 8.6111696 0.0015854010 2.445886e-01 0.534897564 8 106679210 106679292 83 + 1.029 0.916 -0.421
ENSG00000164830 E025 0.0000000       8 106682493 106682545 53 +      
ENSG00000164830 E026 9.1966836 0.0016321177 6.115823e-02 0.248374733 8 106683199 106683306 108 + 1.078 0.901 -0.658
ENSG00000164830 E027 9.5754805 0.0016812499 2.267121e-01 0.514917588 8 106684246 106684359 114 + 1.070 0.958 -0.415
ENSG00000164830 E028 8.4064026 0.0494202231 9.314744e-01 0.979992008 8 106692728 106692877 150 + 0.973 0.971 -0.007
ENSG00000164830 E029 0.1272623 0.0123331267 4.115421e-01   8 106701680 106701743 64 + 0.000 0.107 11.772
ENSG00000164830 E030 9.9734456 0.0014037147 5.589155e-01 0.800307303 8 106702906 106703090 185 + 1.062 1.008 -0.200
ENSG00000164830 E031 0.3621491 0.0165851530 7.602187e-01   8 106706381 106706381 1 + 0.155 0.107 -0.629
ENSG00000164830 E032 52.0009287 0.0004816911 8.010362e-01 0.925753971 8 106706382 106707145 764 + 1.729 1.715 -0.044
ENSG00000164830 E033 1.2277820 0.2593861409 6.896599e-01 0.872431563 8 106707146 106707690 545 + 0.318 0.379 0.369
ENSG00000164830 E034 18.3993203 0.0008983059 9.206989e-01 0.975214559 8 106710622 106710790 169 + 1.290 1.281 -0.033
ENSG00000164830 E035 19.4713388 0.0010518615 1.026771e-02 0.081691755 8 106713823 106713985 163 + 1.381 1.205 -0.616
ENSG00000164830 E036 1.8452462 0.2871779187 2.986511e-01 0.591631060 8 106720488 106720718 231 + 0.360 0.545 0.958
ENSG00000164830 E037 0.4996088 0.0157391326 2.085943e-01   8 106720719 106720743 25 + 0.085 0.264 1.956
ENSG00000164830 E038 0.1265070 0.0123332613 4.114419e-01   8 106726012 106726106 95 + 0.000 0.107 11.772
ENSG00000164830 E039 0.0000000       8 106726107 106726184 78 +      
ENSG00000164830 E040 0.2454921 0.0163736499 8.378903e-01   8 106726185 106726257 73 + 0.085 0.107 0.371
ENSG00000164830 E041 0.2454921 0.0163736499 8.378903e-01   8 106726258 106726309 52 + 0.085 0.107 0.371
ENSG00000164830 E042 6.2191359 0.0310084232 8.541908e-01 0.948506837 8 106737520 106737600 81 + 0.847 0.869 0.088
ENSG00000164830 E043 15.6646807 0.0024667469 2.895949e-01 0.583256009 8 106739458 106739583 126 + 1.255 1.174 -0.289
ENSG00000164830 E044 0.0000000       8 106740243 106740342 100 +      
ENSG00000164830 E045 17.7905757 0.0027186876 9.442125e-01 0.984572234 8 106740343 106740495 153 + 1.276 1.268 -0.027
ENSG00000164830 E046 14.0366999 0.0013330429 5.683830e-01 0.805887844 8 106742222 106742317 96 + 1.157 1.197 0.145
ENSG00000164830 E047 0.1271363 0.0124029163 4.113902e-01   8 106742318 106742484 167 + 0.000 0.107 11.772
ENSG00000164830 E048 15.4336949 0.0009344727 1.381821e-01 0.395537399 8 106745789 106745862 74 + 1.163 1.268 0.371
ENSG00000164830 E049 173.3876279 0.0001224165 4.670653e-05 0.001261491 8 106750806 106752694 1889 + 2.205 2.278 0.245

Help

Please Click HERE to learn more details about the results from DEXseq.