ENSG00000164924

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000353245 ENSG00000164924 No_inf pgKDN_inf YWHAZ protein_coding protein_coding 566.5188 370.1783 663.4113 2.122818 9.049063 0.8416661 304.53821 219.56250 351.96872 3.617625 6.518108 0.6807908 0.54588333 0.593200 0.530750 -0.062450 0.13857006 0.01061998 FALSE  
ENST00000457309 ENSG00000164924 No_inf pgKDN_inf YWHAZ protein_coding protein_coding 566.5188 370.1783 663.4113 2.122818 9.049063 0.8416661 74.36127 58.61693 87.96591 2.189733 3.176759 0.5855450 0.13539167 0.158400 0.132775 -0.025625 0.55940708 0.01061998 FALSE  
ENST00000522542 ENSG00000164924 No_inf pgKDN_inf YWHAZ protein_coding protein_coding 566.5188 370.1783 663.4113 2.122818 9.049063 0.8416661 96.12320 40.95922 117.78804 4.465535 6.144563 1.5237031 0.16085833 0.110675 0.177375 0.066700 0.03824284 0.01061998 FALSE  
ENST00000523131 ENSG00000164924 No_inf pgKDN_inf YWHAZ protein_coding protein_coding 566.5188 370.1783 663.4113 2.122818 9.049063 0.8416661 51.11293 21.82788 71.40139 2.185175 2.333679 1.7093217 0.08566667 0.059000 0.107750 0.048750 0.01061998 0.01061998    
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000164924 E001 0.0000000       8 100916523 100916524 2 -      
ENSG00000164924 E002 27.7898039 5.043933e-04 7.562901e-03 0.0665411917 8 100916525 100918578 2054 - 1.384 1.535 0.521
ENSG00000164924 E003 33.0145579 4.000375e-04 5.262007e-01 0.7786252231 8 100918579 100918682 104 - 1.512 1.546 0.115
ENSG00000164924 E004 34.5140107 3.774609e-04 2.680131e-01 0.5614689816 8 100918683 100918685 3 - 1.520 1.578 0.196
ENSG00000164924 E005 495.8643852 3.705122e-04 4.716364e-04 0.0083346124 8 100918686 100919061 376 - 2.668 2.722 0.179
ENSG00000164924 E006 361.4498303 7.436639e-05 2.585975e-05 0.0007667510 8 100919062 100919229 168 - 2.524 2.592 0.226
ENSG00000164924 E007 1006.0344090 3.206387e-05 2.634151e-05 0.0007779367 8 100919230 100919828 599 - 2.981 3.020 0.129
ENSG00000164924 E008 1235.1406751 3.829908e-04 8.678670e-01 0.9547102953 8 100919829 100920525 697 - 3.086 3.089 0.007
ENSG00000164924 E009 146.0503284 1.079139e-04 6.787494e-01 0.8670805058 8 100920526 100920586 61 - 2.167 2.157 -0.033
ENSG00000164924 E010 122.1656295 1.272875e-04 4.455432e-01 0.7198900351 8 100920587 100920589 3 - 2.094 2.074 -0.069
ENSG00000164924 E011 161.4338135 1.040599e-04 9.817772e-01 0.9983170934 8 100920590 100920602 13 - 2.205 2.207 0.004
ENSG00000164924 E012 135.9707935 1.228854e-04 6.166209e-01 0.8338543985 8 100920603 100920629 27 - 2.126 2.140 0.046
ENSG00000164924 E013 72.0596100 4.690757e-04 1.361655e-01 0.3924518579 8 100920630 100920641 12 - 1.835 1.890 0.185
ENSG00000164924 E014 68.1638687 3.831137e-03 7.262541e-01 0.8904046145 8 100920642 100920715 74 - 1.828 1.845 0.055
ENSG00000164924 E015 95.2900868 3.028539e-04 6.317964e-02 0.2528599313 8 100920716 100920752 37 - 2.003 1.944 -0.199
ENSG00000164924 E016 8.7541657 7.492106e-03 3.577990e-03 0.0393505894 8 100922438 100923954 1517 - 0.839 1.126 1.068
ENSG00000164924 E017 123.2408433 1.519973e-04 6.878997e-03 0.0623549303 8 100923955 100923984 30 - 2.120 2.045 -0.252
ENSG00000164924 E018 124.6755609 1.540761e-04 4.090993e-03 0.0431028760 8 100923985 100923986 2 - 2.127 2.047 -0.267
ENSG00000164924 E019 240.0012772 8.176961e-05 1.123814e-03 0.0164081734 8 100923987 100924050 64 - 2.404 2.339 -0.215
ENSG00000164924 E020 0.6161696 1.786787e-02 3.955419e-01 0.6804184045 8 100924051 100924134 84 - 0.148 0.275 1.119
ENSG00000164924 E021 341.2469832 6.327419e-05 1.290287e-01 0.3811703607 8 100924135 100924298 164 - 2.540 2.515 -0.082
ENSG00000164924 E022 0.3722815 1.653208e-02 3.806424e-01   8 100924299 100924322 24 - 0.080 0.201 1.533
ENSG00000164924 E023 184.5220608 2.513463e-04 9.489795e-01 0.9867620019 8 100924916 100924921 6 - 2.264 2.263 -0.003
ENSG00000164924 E024 307.0388217 2.397688e-04 1.552297e-02 0.1076804540 8 100924922 100925039 118 - 2.502 2.458 -0.146
ENSG00000164924 E025 0.0000000       8 100932029 100932093 65 -      
ENSG00000164924 E026 0.5002991 2.915540e-02 1.768610e-01 0.4512400578 8 100934857 100935055 199 - 0.080 0.275 2.118
ENSG00000164924 E027 0.4816726 2.424300e-02 5.298755e-01   8 100948077 100948162 86 - 0.207 0.112 -1.051
ENSG00000164924 E028 166.2105770 3.038736e-04 1.004040e-02 0.0805232681 8 100948596 100948613 18 - 2.244 2.181 -0.211
ENSG00000164924 E029 186.7467798 9.581668e-05 4.758519e-03 0.0478257757 8 100948614 100948662 49 - 2.295 2.231 -0.212
ENSG00000164924 E030 146.0843207 1.781227e-04 2.346635e-01 0.5237380475 8 100948663 100948732 70 - 2.175 2.145 -0.101
ENSG00000164924 E031 56.3517245 4.836391e-04 2.772734e-01 0.5706527178 8 100948733 100948734 2 - 1.772 1.728 -0.151
ENSG00000164924 E032 132.9431838 1.655446e-03 8.976230e-02 0.3112380591 8 100948735 100948900 166 - 2.144 2.091 -0.179
ENSG00000164924 E033 4.1721757 3.371173e-03 1.626995e-01 0.4312903130 8 100950406 100950557 152 - 0.629 0.799 0.703
ENSG00000164924 E034 0.2537694 1.595775e-02 1.399433e-01   8 100950909 100951185 277 - 0.000 0.201 9.717
ENSG00000164924 E035 0.3728195 1.656590e-02 3.804311e-01   8 100951186 100951234 49 - 0.080 0.201 1.534
ENSG00000164924 E036 1.2106252 3.451135e-02 4.961284e-01 0.7571643366 8 100951235 100951449 215 - 0.385 0.275 -0.689
ENSG00000164924 E037 3.5805171 1.048330e-01 1.259283e-01 0.3762353635 8 100951456 100951595 140 - 0.537 0.779 1.034
ENSG00000164924 E038 81.2526927 1.676449e-03 5.341733e-05 0.0014090528 8 100951929 100951955 27 - 1.970 1.814 -0.525
ENSG00000164924 E039 63.3070007 2.688489e-04 3.789956e-02 0.1878399783 8 100951956 100952125 170 - 1.836 1.756 -0.272
ENSG00000164924 E040 5.1565460 7.085815e-03 1.470562e-01 0.4082002400 8 100952126 100952128 3 - 0.705 0.874 0.671
ENSG00000164924 E041 12.0100906 1.216907e-02 1.047696e-01 0.3383820969 8 100952129 100952308 180 - 1.040 1.188 0.533
ENSG00000164924 E042 4.4012868 1.171076e-01 4.974415e-01 0.7580743593 8 100952309 100952472 164 - 0.687 0.779 0.372
ENSG00000164924 E043 2.2024775 6.908147e-03 4.425189e-01 0.7178420477 8 100952473 100952619 147 - 0.452 0.562 0.534
ENSG00000164924 E044 7.9515045 6.725820e-03 2.908567e-01 0.5843788870 8 100952850 100953057 208 - 0.899 1.006 0.400
ENSG00000164924 E045 11.1097358 1.280420e-03 1.395706e-04 0.0031208963 8 100953269 100953388 120 - 0.910 1.235 1.186

Help

Please Click HERE to learn more details about the results from DEXseq.