ENSG00000164930

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000358755 ENSG00000164930 No_inf pgKDN_inf FZD6 protein_coding protein_coding 13.03482 15.09734 13.36106 0.6843656 0.4628336 -0.1761366 3.4987524 4.4633299 1.765956 1.6436799 1.7659555 -1.3327537 0.28195833 0.31150 0.131400 -0.180100 0.37378172 0.02653238 FALSE TRUE
ENST00000519011 ENSG00000164930 No_inf pgKDN_inf FZD6 protein_coding nonsense_mediated_decay 13.03482 15.09734 13.36106 0.6843656 0.4628336 -0.1761366 0.3614169 1.0842508 0.000000 1.0842508 0.0000000 -6.7737996 0.02563333 0.07690 0.000000 -0.076900 0.86759175 0.02653238 FALSE TRUE
ENST00000522484 ENSG00000164930 No_inf pgKDN_inf FZD6 protein_coding nonsense_mediated_decay 13.03482 15.09734 13.36106 0.6843656 0.4628336 -0.1761366 1.0569863 0.0000000 2.496557 0.0000000 0.9564705 7.9695631 0.08109167 0.00000 0.184450 0.184450 0.02653238 0.02653238 TRUE TRUE
ENST00000522566 ENSG00000164930 No_inf pgKDN_inf FZD6 protein_coding protein_coding 13.03482 15.09734 13.36106 0.6843656 0.4628336 -0.1761366 0.6045601 1.8136802 0.000000 1.8136802 0.0000000 -7.5107089 0.03565000 0.10695 0.000000 -0.106950 0.86192665 0.02653238 FALSE TRUE
ENST00000523739 ENSG00000164930 No_inf pgKDN_inf FZD6 protein_coding protein_coding 13.03482 15.09734 13.36106 0.6843656 0.4628336 -0.1761366 1.7475717 0.8472722 3.169089 0.8472722 1.1340445 1.8907882 0.13943333 0.05540 0.239225 0.183825 0.32870839 0.02653238 FALSE TRUE
MSTRG.28061.8 ENSG00000164930 No_inf pgKDN_inf FZD6 protein_coding   13.03482 15.09734 13.36106 0.6843656 0.4628336 -0.1761366 5.7655353 6.8888109 5.929455 1.3379965 0.4856244 -0.2160172 0.43621667 0.44920 0.444925 -0.004275 1.00000000 0.02653238 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000164930 E001 0.0000000       8 103298433 103298570 138 +      
ENSG00000164930 E002 0.4815440 0.0206425693 0.224032396   8 103298831 103298864 34 + 0.261 0.086 -1.918
ENSG00000164930 E003 0.3550369 0.0228080793 0.067244412   8 103298865 103298875 11 + 0.261 0.000 -11.447
ENSG00000164930 E004 0.8338119 0.0132311535 0.024653119 0.14428946 8 103298876 103298897 22 + 0.423 0.086 -2.918
ENSG00000164930 E005 2.4405135 0.0111045061 0.351608942 0.64183567 8 103298898 103298995 98 + 0.604 0.472 -0.622
ENSG00000164930 E006 0.0000000       8 103299954 103299955 2 +      
ENSG00000164930 E007 4.7810475 0.0029442580 0.587908668 0.81716017 8 103299956 103300084 129 + 0.794 0.729 -0.259
ENSG00000164930 E008 4.3353533 0.0044516095 0.228541852 0.51718945 8 103300085 103300199 115 + 0.633 0.779 0.606
ENSG00000164930 E009 4.1264897 0.0037343431 0.043605073 0.20386581 8 103300200 103300284 85 + 0.830 0.584 -1.025
ENSG00000164930 E010 0.0000000       8 103307751 103307880 130 +      
ENSG00000164930 E011 3.7364550 0.0249567808 0.005838087 0.05533124 8 103318590 103318648 59 + 0.848 0.472 -1.622
ENSG00000164930 E012 7.2272661 0.0024627913 0.463268666 0.73322733 8 103318649 103318786 138 + 0.953 0.878 -0.284
ENSG00000164930 E013 24.2678653 0.0005776826 0.510038988 0.76762035 8 103324481 103325034 554 + 1.377 1.413 0.125
ENSG00000164930 E014 3.3083772 0.0054026350 0.697872089 0.87669236 8 103325035 103325053 19 + 0.660 0.608 -0.226
ENSG00000164930 E015 19.0158460 0.0008281728 0.485556184 0.74938440 8 103325054 103325391 338 + 1.323 1.276 -0.165
ENSG00000164930 E016 12.0941771 0.0121375678 0.411389773 0.69311907 8 103325392 103325498 107 + 1.069 1.142 0.264
ENSG00000164930 E017 16.9743337 0.0008619976 0.014368238 0.10204590 8 103328268 103328416 149 + 1.143 1.314 0.605
ENSG00000164930 E018 34.9323448 0.0004275208 0.112289589 0.35220859 8 103329655 103330065 411 + 1.593 1.516 -0.262
ENSG00000164930 E019 113.5743400 0.0001926264 0.109619563 0.34749670 8 103331341 103332866 1526 + 2.035 2.068 0.109

Help

Please Click HERE to learn more details about the results from DEXseq.