ENSG00000164941

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000517918 ENSG00000164941 No_inf pgKDN_inf INTS8 protein_coding protein_coding_CDS_not_defined 94.02402 115.9768 75.9146 15.44572 10.27477 -0.6113214 10.861062 12.884994 13.34386 4.825997 5.8079527 0.05044577 0.1228250 0.125825 0.171700 0.045875 0.98614987 0.02944006 FALSE FALSE
ENST00000520845 ENSG00000164941 No_inf pgKDN_inf INTS8 protein_coding protein_coding_CDS_not_defined 94.02402 115.9768 75.9146 15.44572 10.27477 -0.6113214 4.719736 6.496731 0.00000 3.750943 0.0000000 -9.34578914 0.0585500 0.072625 0.000000 -0.072625 0.63038989 0.02944006 FALSE FALSE
ENST00000520853 ENSG00000164941 No_inf pgKDN_inf INTS8 protein_coding retained_intron 94.02402 115.9768 75.9146 15.44572 10.27477 -0.6113214 33.553623 46.554314 12.44459 20.646880 4.2980975 -1.90254676 0.3178667 0.352675 0.159325 -0.193350 0.85429310 0.02944006   FALSE
ENST00000521155 ENSG00000164941 No_inf pgKDN_inf INTS8 protein_coding retained_intron 94.02402 115.9768 75.9146 15.44572 10.27477 -0.6113214 14.606458 16.072608 17.25896 6.309819 3.4077669 0.10267950 0.1620250 0.146925 0.224125 0.077200 0.81953317 0.02944006   FALSE
ENST00000523731 ENSG00000164941 No_inf pgKDN_inf INTS8 protein_coding protein_coding 94.02402 115.9768 75.9146 15.44572 10.27477 -0.6113214 15.143127 12.574700 18.48972 1.465394 0.7274272 0.55583253 0.1776333 0.111875 0.254300 0.142425 0.02944006 0.02944006 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000164941 E001 0.0000000       8 94813311 94813438 128 +      
ENSG00000164941 E002 0.0000000       8 94822851 94823181 331 +      
ENSG00000164941 E003 0.4896324 0.0158673655 0.940673159   8 94823210 94823286 77 + 0.179 0.168 -0.110
ENSG00000164941 E004 0.4896324 0.0158673655 0.940673159   8 94823287 94823289 3 + 0.179 0.168 -0.110
ENSG00000164941 E005 0.7355979 0.0135502029 0.927975624 0.97862297 8 94823290 94823297 8 + 0.246 0.232 -0.110
ENSG00000164941 E006 0.7355979 0.0135502029 0.927975624 0.97862297 8 94823298 94823298 1 + 0.246 0.232 -0.110
ENSG00000164941 E007 0.8627342 0.0125745565 0.781850843 0.91609984 8 94823299 94823301 3 + 0.246 0.288 0.305
ENSG00000164941 E008 0.8722372 0.0124304138 0.296182482 0.58926209 8 94823302 94823302 1 + 0.179 0.338 1.212
ENSG00000164941 E009 1.9596274 0.0069963257 0.881136734 0.96003909 8 94823303 94823306 4 + 0.482 0.460 -0.110
ENSG00000164941 E010 6.7481096 0.0344396617 0.929862590 0.97942891 8 94823307 94823375 69 + 0.881 0.894 0.048
ENSG00000164941 E011 19.3518545 0.0116903919 0.026233954 0.14993134 8 94823376 94823561 186 + 1.392 1.219 -0.605
ENSG00000164941 E012 18.6041257 0.0007323862 0.004985337 0.04951734 8 94824893 94825067 175 + 1.383 1.193 -0.664
ENSG00000164941 E013 15.9324068 0.0014946018 0.009955226 0.08001590 8 94827263 94827403 141 + 1.319 1.130 -0.667
ENSG00000164941 E014 15.9287736 0.0008888495 0.802892492 0.92672767 8 94827722 94827793 72 + 1.237 1.219 -0.066
ENSG00000164941 E015 11.0202172 0.0012458314 0.723865021 0.88905681 8 94828975 94828991 17 + 1.095 1.065 -0.110
ENSG00000164941 E016 11.7784098 0.0012591692 0.807156658 0.92887002 8 94828992 94829026 35 + 1.095 1.114 0.071
ENSG00000164941 E017 27.9439216 0.0031925278 0.050416979 0.22188408 8 94831992 94832174 183 + 1.519 1.403 -0.401
ENSG00000164941 E018 19.1103069 0.0031903934 0.012102124 0.09105454 8 94836524 94836631 108 + 1.387 1.213 -0.611
ENSG00000164941 E019 9.1920556 0.0050229887 0.841408185 0.94305831 8 94838463 94838493 31 + 1.017 0.998 -0.071
ENSG00000164941 E020 20.9591464 0.0007939195 0.912794605 0.97229748 8 94838494 94838618 125 + 1.344 1.337 -0.026
ENSG00000164941 E021 0.2362687 0.0156458027 0.218286948   8 94839612 94839647 36 + 0.179 0.000 -11.082
ENSG00000164941 E022 21.3821055 0.0016367417 0.190684097 0.46992717 8 94841491 94841591 101 + 1.392 1.308 -0.292
ENSG00000164941 E023 27.3001537 0.0012160728 0.533951571 0.78428979 8 94842347 94842488 142 + 1.470 1.434 -0.123
ENSG00000164941 E024 16.4810352 0.0015858953 0.232216323 0.52083575 8 94849462 94849532 71 + 1.286 1.200 -0.303
ENSG00000164941 E025 41.8523488 0.0003833566 0.653070231 0.85411115 8 94849916 94850091 176 + 1.620 1.640 0.068
ENSG00000164941 E026 36.1236825 0.0005174500 0.006697757 0.06117473 8 94851553 94851686 134 + 1.491 1.626 0.459
ENSG00000164941 E027 0.2373413 0.0157175793 0.218168816   8 94853794 94853804 11 + 0.179 0.000 -11.082
ENSG00000164941 E028 30.8628752 0.0005061868 0.263374717 0.55631127 8 94853805 94853915 111 + 1.470 1.528 0.202
ENSG00000164941 E029 38.2557089 0.0003821250 0.116939724 0.36093780 8 94856777 94856962 186 + 1.551 1.626 0.254
ENSG00000164941 E030 13.6675874 0.0012601068 0.307206301 0.60045422 8 94856963 94856978 16 + 1.121 1.200 0.282
ENSG00000164941 E031 33.1232248 0.0008846871 0.102668421 0.33498803 8 94859511 94859632 122 + 1.484 1.569 0.289
ENSG00000164941 E032 4.2183781 0.0033796825 0.065125733 0.25702837 8 94859633 94860347 715 + 0.579 0.807 0.954
ENSG00000164941 E033 0.6251720 0.0156239595 0.200019752 0.48192385 8 94864693 94864744 52 + 0.098 0.288 1.890
ENSG00000164941 E034 32.7072508 0.0004970384 0.265423999 0.55871431 8 94865506 94865619 114 + 1.495 1.552 0.195
ENSG00000164941 E035 32.4573091 0.0006011553 0.213661556 0.49885811 8 94865620 94865690 71 + 1.488 1.552 0.219
ENSG00000164941 E036 2.2491163 0.0166198821 0.027530225 0.15471205 8 94865691 94865700 10 + 0.305 0.633 1.697
ENSG00000164941 E037 24.4336680 0.0078096171 0.628065068 0.84015133 8 94866158 94866191 34 + 1.387 1.418 0.108
ENSG00000164941 E038 3.1378505 0.1834496930 0.027134527 0.15308553 8 94866192 94866311 120 + 0.305 0.774 2.281
ENSG00000164941 E039 2.3782026 0.0071606465 0.015714207 0.10846302 8 94866312 94866351 40 + 0.305 0.657 1.797
ENSG00000164941 E040 1.5061867 0.0087212051 0.023486354 0.14005591 8 94866352 94866353 2 + 0.179 0.526 2.212
ENSG00000164941 E041 6.9150168 0.0024310571 0.114269731 0.35603834 8 94866737 94867030 294 + 0.802 0.966 0.627
ENSG00000164941 E042 4.5822861 0.0034662592 0.114954095 0.35741303 8 94867031 94867139 109 + 0.634 0.823 0.775
ENSG00000164941 E043 23.9836388 0.0084966500 0.323656747 0.61633431 8 94867140 94867172 33 + 1.359 1.426 0.232
ENSG00000164941 E044 24.9327765 0.0005887526 0.168940808 0.44041053 8 94867173 94867196 24 + 1.454 1.373 -0.280
ENSG00000164941 E045 0.4816076 0.0153731916 0.285033419   8 94867197 94867275 79 + 0.246 0.092 -1.695
ENSG00000164941 E046 30.9546147 0.0010953592 0.306001900 0.59925887 8 94867276 94867327 52 + 1.532 1.477 -0.190
ENSG00000164941 E047 24.0742607 0.0065773298 0.237303065 0.52628271 8 94867328 94867337 10 + 1.438 1.360 -0.271
ENSG00000164941 E048 0.3631878 0.0167039736 0.538506456   8 94867338 94867840 503 + 0.179 0.092 -1.110
ENSG00000164941 E049 0.7319823 0.4489395414 0.918823101 0.97439961 8 94868692 94868813 122 + 0.246 0.232 -0.107
ENSG00000164941 E050 47.2934013 0.0082287443 0.700405515 0.87795216 8 94871884 94872002 119 + 1.693 1.674 -0.065
ENSG00000164941 E051 42.2528206 0.0003719331 0.515044733 0.77132894 8 94873374 94873477 104 + 1.651 1.621 -0.102
ENSG00000164941 E052 3.7433732 0.0056064189 0.005924911 0.05599337 8 94873478 94873752 275 + 0.444 0.807 1.606
ENSG00000164941 E053 25.6987996 0.0005728485 0.292576756 0.58608805 8 94874552 94874602 51 + 1.392 1.452 0.209
ENSG00000164941 E054 2.5867503 0.0054665312 0.632396761 0.84255758 8 94875951 94876073 123 + 0.517 0.583 0.305
ENSG00000164941 E055 34.2812206 0.0050341157 0.451061114 0.72422545 8 94876074 94876147 74 + 1.522 1.566 0.149
ENSG00000164941 E056 2.3579995 0.0171813214 0.161095455 0.42923240 8 94876148 94876220 73 + 0.402 0.609 1.005
ENSG00000164941 E057 23.2134826 0.0006293349 0.164935093 0.43442470 8 94876221 94876285 65 + 1.426 1.342 -0.292
ENSG00000164941 E058 8.6007613 0.0015949610 0.005097769 0.05033743 8 94876446 94876489 44 + 1.104 0.838 -0.990
ENSG00000164941 E059 0.6256753 0.1810673001 0.263023889 0.55591586 8 94876490 94876646 157 + 0.098 0.288 1.891
ENSG00000164941 E060 0.0000000       8 94880118 94881746 1629 +      

Help

Please Click HERE to learn more details about the results from DEXseq.