ENSG00000164944

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000522196 ENSG00000164944 No_inf pgKDN_inf VIRMA protein_coding retained_intron 39.10165 44.66067 38.37223 0.8393512 2.462559 -0.2188892 18.417630 23.327813 19.605736 1.0937164 2.8928282 -0.2506579 0.45050000 0.521575 0.502575 -0.01900 9.611591e-01 5.503715e-09   TRUE
ENST00000523263 ENSG00000164944 No_inf pgKDN_inf VIRMA protein_coding nonsense_mediated_decay 39.10165 44.66067 38.37223 0.8393512 2.462559 -0.2188892 3.188831 6.637015 0.000000 1.2037052 0.0000000 -9.3765627 0.07260833 0.148100 0.000000 -0.14810 5.503715e-09 5.503715e-09 TRUE TRUE
MSTRG.27944.5 ENSG00000164944 No_inf pgKDN_inf VIRMA protein_coding   39.10165 44.66067 38.37223 0.8393512 2.462559 -0.2188892 3.327906 2.429928 3.966181 0.4183666 0.6133179 0.7045446 0.09184167 0.054250 0.104600 0.05035 5.483596e-01 5.503715e-09 TRUE TRUE
MSTRG.27944.6 ENSG00000164944 No_inf pgKDN_inf VIRMA protein_coding   39.10165 44.66067 38.37223 0.8393512 2.462559 -0.2188892 5.620100 2.759452 9.205299 1.7772419 1.4869929 1.7344303 0.15524167 0.061500 0.247750 0.18625 2.180003e-01 5.503715e-09 FALSE TRUE
MSTRG.27944.7 ENSG00000164944 No_inf pgKDN_inf VIRMA protein_coding   39.10165 44.66067 38.37223 0.8393512 2.462559 -0.2188892 4.489986 4.339930 2.841695 1.6854499 1.4381441 -0.6091726 0.11980833 0.098475 0.073975 -0.02450 9.142272e-01 5.503715e-09 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000164944 E001 2.1784001 0.0065130496 2.990467e-01 0.5919037281 8 94487689 94488204 516 - 0.567 0.415 -0.747
ENSG00000164944 E002 2.4586978 0.0074295855 4.042217e-01 0.6870377665 8 94488205 94488519 315 - 0.480 0.595 0.542
ENSG00000164944 E003 0.9701065 0.0118855745 6.494053e-01 0.8522733702 8 94488520 94488520 1 - 0.327 0.256 -0.484
ENSG00000164944 E004 15.9058075 0.0310865370 3.292362e-01 0.6217011034 8 94488521 94488614 94 - 1.272 1.173 -0.350
ENSG00000164944 E005 54.2181025 0.0003111943 2.625748e-03 0.0312138178 8 94488615 94488860 246 - 1.682 1.799 0.397
ENSG00000164944 E006 31.9979011 0.0004539369 5.713364e-02 0.2389273242 8 94489939 94490082 144 - 1.469 1.566 0.330
ENSG00000164944 E007 0.0000000       8 94490083 94490172 90 -      
ENSG00000164944 E008 31.3261943 0.0008037663 3.492239e-01 0.6395992970 8 94491578 94491737 160 - 1.486 1.533 0.163
ENSG00000164944 E009 37.1017225 0.0005657841 1.615840e-01 0.4297484910 8 94491738 94491909 172 - 1.548 1.614 0.224
ENSG00000164944 E010 31.6130957 0.0007157705 1.168030e-01 0.3606188456 8 94492652 94492818 167 - 1.473 1.553 0.275
ENSG00000164944 E011 19.1380008 0.0007017153 1.089147e-01 0.3464585204 8 94494860 94494956 97 - 1.251 1.355 0.364
ENSG00000164944 E012 26.9101056 0.0005742543 5.736628e-03 0.0546352236 8 94495731 94495891 161 - 1.365 1.519 0.530
ENSG00000164944 E013 2.7593951 0.0064952248 5.420185e-04 0.0092951435 8 94495892 94496327 436 - 0.278 0.764 2.423
ENSG00000164944 E014 26.2155246 0.0005413160 1.450010e-01 0.4053534515 8 94496328 94496480 153 - 1.394 1.475 0.280
ENSG00000164944 E015 0.7521520 0.0151117929 5.908295e-02 0.2438833449 8 94496481 94499373 2893 - 0.088 0.368 2.572
ENSG00000164944 E016 19.5227602 0.0007563666 7.704123e-01 0.9115028977 8 94499374 94499506 133 - 1.321 1.300 -0.073
ENSG00000164944 E017 22.6996927 0.0006941306 9.619788e-01 0.9916847719 8 94506500 94506717 218 - 1.374 1.375 0.004
ENSG00000164944 E018 9.4615981 0.0014655034 1.384484e-01 0.3958621162 8 94509688 94509756 69 - 1.079 0.942 -0.504
ENSG00000164944 E019 21.7772486 0.0006379569 3.685052e-01 0.6570016723 8 94509757 94509940 184 - 1.331 1.385 0.188
ENSG00000164944 E020 27.8694722 0.0059177919 6.176695e-01 0.8345043680 8 94510417 94510652 236 - 1.446 1.475 0.101
ENSG00000164944 E021 1.3617436 0.0448433757 2.575841e-01 0.5498947450 8 94510653 94510732 80 - 0.278 0.458 1.060
ENSG00000164944 E022 10.3101616 0.0110621346 1.274216e-01 0.3785213575 8 94510733 94511184 452 - 1.118 0.968 -0.548
ENSG00000164944 E023 54.3247102 0.0002562482 1.685832e-01 0.4398822202 8 94511185 94511729 545 - 1.768 1.712 -0.191
ENSG00000164944 E024 13.1929535 0.0012784272 9.747975e-01 0.9954113626 8 94511996 94512089 94 - 1.153 1.149 -0.015
ENSG00000164944 E025 0.5970322 0.2031926106 3.142910e-01 0.6073876049 8 94512090 94512455 366 - 0.278 0.103 -1.746
ENSG00000164944 E026 10.5354611 0.0013334072 4.085362e-01 0.6908289883 8 94514869 94514951 83 - 1.027 1.097 0.253
ENSG00000164944 E027 20.0566817 0.0034386619 1.304106e-01 0.3831335435 8 94517788 94517942 155 - 1.370 1.264 -0.369
ENSG00000164944 E028 42.8215319 0.0048411947 6.648957e-01 0.8606994135 8 94518985 94519476 492 - 1.653 1.627 -0.086
ENSG00000164944 E029 75.2952939 0.0004162789 3.036954e-06 0.0001220415 8 94526223 94527363 1141 - 1.951 1.790 -0.543
ENSG00000164944 E030 2.6366495 0.0877401740 3.007814e-02 0.1631957545 8 94529070 94529075 6 - 0.702 0.316 -1.918
ENSG00000164944 E031 13.3633247 0.0033580653 1.863975e-01 0.4643367541 8 94529076 94529216 141 - 1.205 1.097 -0.387
ENSG00000164944 E032 10.4323667 0.0013515697 1.208190e-01 0.3676964401 8 94529217 94529342 126 - 1.118 0.980 -0.502
ENSG00000164944 E033 6.2358622 0.0850682063 8.326249e-01 0.9396298629 8 94530963 94531085 123 - 0.834 0.885 0.196
ENSG00000164944 E034 7.1961561 0.0019821769 8.231846e-01 0.9357006279 8 94534839 94535007 169 - 0.924 0.900 -0.091
ENSG00000164944 E035 4.4959002 0.0033876139 3.506093e-01 0.6408134356 8 94537103 94537151 49 - 0.789 0.676 -0.464
ENSG00000164944 E036 8.2516072 0.0018142798 1.474649e-01 0.4088599604 8 94538260 94538346 87 - 1.027 0.885 -0.530
ENSG00000164944 E037 11.2891594 0.0235424578 2.058524e-01 0.4893099350 8 94543827 94543942 116 - 1.146 1.015 -0.477
ENSG00000164944 E038 4.6481512 0.0086797097 8.242253e-01 0.9361748743 8 94553385 94553529 145 - 0.739 0.764 0.101

Help

Please Click HERE to learn more details about the results from DEXseq.