ENSG00000165102

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000379644 ENSG00000165102 No_inf pgKDN_inf HGSNAT protein_coding protein_coding 80.05728 86.8086 75.90483 1.250734 1.265748 -0.1936225 57.996944 42.861015 64.852285 1.5563229 2.854267 0.5973773 0.73475000 0.494300 0.854250 0.35995 2.603673e-08 9.914941e-09 FALSE TRUE
ENST00000519705 ENSG00000165102 No_inf pgKDN_inf HGSNAT protein_coding retained_intron 80.05728 86.8086 75.90483 1.250734 1.265748 -0.1936225 4.752522 10.183541 1.610416 0.7614772 0.624152 -2.6532191 0.05699167 0.117550 0.021550 -0.09600 2.403216e-02 9.914941e-09 FALSE TRUE
ENST00000520678 ENSG00000165102 No_inf pgKDN_inf HGSNAT protein_coding retained_intron 80.05728 86.8086 75.90483 1.250734 1.265748 -0.1936225 2.448402 5.772272 0.000000 0.6635187 0.000000 -9.1754926 0.02878333 0.066200 0.000000 -0.06620 9.914941e-09 9.914941e-09 FALSE FALSE
MSTRG.27626.5 ENSG00000165102 No_inf pgKDN_inf HGSNAT protein_coding   80.05728 86.8086 75.90483 1.250734 1.265748 -0.1936225 6.659884 13.815898 4.586537 1.4274590 2.348487 -1.5887538 0.07976667 0.158875 0.060475 -0.09840 3.459394e-01 9.914941e-09 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000165102 E001 5.1493675 0.0036279592 9.215831e-01 9.755768e-01 8 43140464 43140496 33 + 0.772 0.804 0.129
ENSG00000165102 E002 5.9914188 0.0189532332 7.442368e-01 8.987432e-01 8 43140497 43140503 7 + 0.853 0.836 -0.066
ENSG00000165102 E003 17.8139975 0.0015224220 1.300898e-01 3.826375e-01 8 43140504 43140614 111 + 1.315 1.233 -0.286
ENSG00000165102 E004 27.6103809 0.0005171018 1.434596e-03 1.974821e-02 8 43146948 43147063 116 + 1.530 1.375 -0.535
ENSG00000165102 E005 32.8407547 0.0005774909 9.765166e-04 1.475234e-02 8 43158575 43158711 137 + 1.600 1.452 -0.504
ENSG00000165102 E006 42.9590354 0.0007649349 1.818380e-02 1.191212e-01 8 43158923 43159044 122 + 1.685 1.600 -0.288
ENSG00000165102 E007 37.8423192 0.0004035424 3.775020e-04 6.979839e-03 8 43161438 43161507 70 + 1.660 1.512 -0.505
ENSG00000165102 E008 0.2536433 0.0159828156 2.652462e-01   8 43167944 43168061 118 + 0.000 0.173 11.504
ENSG00000165102 E009 36.7985992 0.0020455260 7.141595e-03 6.387642e-02 8 43169173 43169242 70 + 1.633 1.518 -0.392
ENSG00000165102 E010 44.5012053 0.0009617778 5.121373e-05 1.358663e-03 8 43170585 43170694 110 + 1.734 1.572 -0.550
ENSG00000165102 E011 21.2667343 0.0054498323 5.135968e-03 5.058904e-02 8 43172310 43172317 8 + 1.428 1.257 -0.593
ENSG00000165102 E012 40.2546193 0.0005063950 8.013193e-03 6.920473e-02 8 43172318 43172386 69 + 1.664 1.564 -0.342
ENSG00000165102 E013 34.9754732 0.0088562228 2.318801e-01 5.205503e-01 8 43173713 43173743 31 + 1.581 1.531 -0.170
ENSG00000165102 E014 7.7252654 0.0085542578 1.468202e-03 2.010817e-02 8 43173744 43174232 489 + 0.714 1.079 1.396
ENSG00000165102 E015 33.0486094 0.0004372478 3.737491e-01 6.614530e-01 8 43178074 43178118 45 + 1.542 1.521 -0.072
ENSG00000165102 E016 61.5376350 0.0002786934 7.415322e-03 6.566818e-02 8 43178119 43178234 116 + 1.834 1.757 -0.261
ENSG00000165102 E017 0.6257075 0.0149251680 1.963922e-01 4.770410e-01 8 43180289 43180738 450 + 0.095 0.296 1.992
ENSG00000165102 E018 6.3766463 0.0021644798 8.955640e-05 2.171823e-03 8 43181647 43182144 498 + 0.568 1.032 1.854
ENSG00000165102 E019 43.8688327 0.0003578370 1.230084e-03 1.755579e-02 8 43182145 43182199 55 + 1.710 1.589 -0.411
ENSG00000165102 E020 49.8472684 0.0002894620 6.669517e-02 2.601719e-01 8 43182200 43182260 61 + 1.733 1.680 -0.178
ENSG00000165102 E021 0.0000000       8 43182349 43182415 67 +      
ENSG00000165102 E022 65.8523286 0.0002228643 8.551641e-04 1.329176e-02 8 43191474 43191595 122 + 1.873 1.775 -0.330
ENSG00000165102 E023 66.5199809 0.0027893491 1.844619e-01 4.616130e-01 8 43192304 43192430 127 + 1.845 1.814 -0.103
ENSG00000165102 E024 47.0155765 0.0011482075 4.791095e-01 7.449984e-01 8 43193757 43193843 87 + 1.685 1.678 -0.023
ENSG00000165102 E025 6.5461424 0.0021865057 1.841979e-08 1.248057e-06 8 43193844 43194151 308 + 0.393 1.087 2.930
ENSG00000165102 E026 9.4343101 0.0014350697 1.709351e-10 1.667128e-08 8 43195817 43196167 351 + 0.538 1.227 2.692
ENSG00000165102 E027 9.8409375 0.0013829050 7.626470e-14 1.148955e-11 8 43196168 43196429 262 + 0.434 1.263 3.334
ENSG00000165102 E028 7.7516476 0.0050313382 1.506569e-05 4.848167e-04 8 43196430 43196540 111 + 0.622 1.113 1.906
ENSG00000165102 E029 14.7877895 0.0009053995 5.753849e-12 6.820397e-10 8 43196541 43196947 407 + 0.789 1.392 2.200
ENSG00000165102 E030 48.8037576 0.0007549214 1.441927e-01 4.043512e-01 8 43196948 43197025 78 + 1.716 1.678 -0.131
ENSG00000165102 E031 0.3806233 0.0158243634 1.160762e-01   8 43197026 43197671 646 + 0.000 0.239 12.081
ENSG00000165102 E032 53.7510274 0.0004883560 3.655934e-01 6.540639e-01 8 43197672 43197742 71 + 1.744 1.732 -0.041
ENSG00000165102 E033 62.4108506 0.0002510118 1.775980e-01 4.522170e-01 8 43197840 43197952 113 + 1.815 1.789 -0.087
ENSG00000165102 E034 1379.7289318 0.0011913875 2.219126e-07 1.188544e-05 8 43199388 43202855 3468 + 3.104 3.171 0.224

Help

Please Click HERE to learn more details about the results from DEXseq.