ENSG00000165283

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000356493 ENSG00000165283 No_inf pgKDN_inf STOML2 protein_coding protein_coding 60.16056 45.4414 66.35823 1.862821 3.198478 0.5461681 15.516086 13.252387 10.174415 4.4794179 6.044837 -0.3809773 0.25900000 0.281600 0.156175 -0.125425 7.296369e-01 2.668073e-12 FALSE TRUE
ENST00000452248 ENSG00000165283 No_inf pgKDN_inf STOML2 protein_coding protein_coding 60.16056 45.4414 66.35823 1.862821 3.198478 0.5461681 4.318473 0.000000 11.951191 0.0000000 1.973440 10.2241453 0.06564167 0.000000 0.182450 0.182450 2.668073e-12 2.668073e-12 FALSE TRUE
ENST00000487490 ENSG00000165283 No_inf pgKDN_inf STOML2 protein_coding protein_coding_CDS_not_defined 60.16056 45.4414 66.35823 1.862821 3.198478 0.5461681 12.915982 12.549096 9.623549 2.7933206 3.448081 -0.3825934 0.21645833 0.272150 0.138850 -0.133300 4.770377e-01 2.668073e-12   FALSE
ENST00000619795 ENSG00000165283 No_inf pgKDN_inf STOML2 protein_coding protein_coding 60.16056 45.4414 66.35823 1.862821 3.198478 0.5461681 7.240379 3.740435 5.784522 2.4302038 2.696329 0.6276314 0.11692500 0.082975 0.090975 0.008000 9.694419e-01 2.668073e-12 FALSE TRUE
MSTRG.28658.4 ENSG00000165283 No_inf pgKDN_inf STOML2 protein_coding   60.16056 45.4414 66.35823 1.862821 3.198478 0.5461681 12.728308 8.313795 22.838680 5.0402148 5.449020 1.4567975 0.21244167 0.193450 0.342550 0.149100 7.105536e-01 2.668073e-12 FALSE TRUE
MSTRG.28658.5 ENSG00000165283 No_inf pgKDN_inf STOML2 protein_coding   60.16056 45.4414 66.35823 1.862821 3.198478 0.5461681 6.375259 6.119103 5.092177 0.9823073 1.344857 -0.2645629 0.10998333 0.137350 0.075325 -0.062025 5.864376e-01 2.668073e-12 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000165283 E001 0.0000000       9 35099776 35099777 2 -      
ENSG00000165283 E002 0.2363338 0.0157831410 0.393757731   9 35099778 35099893 116 - 0.149 0.000 -9.711
ENSG00000165283 E003 0.9612925 0.0252279870 0.351965024 0.64207278 9 35099894 35099895 2 - 0.348 0.200 -1.065
ENSG00000165283 E004 51.0604948 0.0004723162 0.256979632 0.54921301 9 35099896 35100172 277 - 1.692 1.737 0.153
ENSG00000165283 E005 51.8002554 0.0021636290 0.269362916 0.56298271 9 35100598 35100726 129 - 1.698 1.744 0.158
ENSG00000165283 E006 1.9781016 0.0071034826 0.087970213 0.30763052 9 35100727 35100931 205 - 0.348 0.595 1.257
ENSG00000165283 E007 38.0196702 0.0006834268 0.440055267 0.71584801 9 35100932 35101011 80 - 1.602 1.565 -0.127
ENSG00000165283 E008 51.2481624 0.0003883463 0.824027423 0.93615653 9 35101135 35101279 145 - 1.710 1.718 0.029
ENSG00000165283 E009 38.1827314 0.0004161529 0.213122734 0.49835883 9 35101426 35101560 135 - 1.563 1.621 0.196
ENSG00000165283 E010 31.1384470 0.0005381714 0.784522469 0.91683854 9 35101710 35101780 71 - 1.509 1.494 -0.051
ENSG00000165283 E011 27.0960046 0.0005002738 0.526262914 0.77867450 9 35101781 35101811 31 - 1.459 1.423 -0.125
ENSG00000165283 E012 34.1774698 0.0004312107 0.035283673 0.17982116 9 35101904 35101962 59 - 1.584 1.477 -0.366
ENSG00000165283 E013 41.6329842 0.0003511515 0.141707675 0.40052729 9 35102095 35102194 100 - 1.653 1.586 -0.228
ENSG00000165283 E014 4.8075059 0.0030769840 0.025696303 0.14804944 9 35102195 35102364 170 - 0.630 0.889 1.044
ENSG00000165283 E015 30.2248480 0.0005570719 0.497470159 0.75807520 9 35102686 35102823 138 - 1.475 1.510 0.122
ENSG00000165283 E016 5.5633383 0.0027506147 0.004580485 0.04657431 9 35102824 35103049 226 - 0.651 0.964 1.240
ENSG00000165283 E017 15.8803939 0.0100134033 0.168343921 0.43953281 9 35103050 35103160 111 - 1.269 1.152 -0.415
ENSG00000165283 E018 2.4960557 0.0061353036 0.001387432 0.01926120 9 35103161 35103195 35 - 0.689 0.200 -2.728

Help

Please Click HERE to learn more details about the results from DEXseq.