ENSG00000165792

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000339374 ENSG00000165792 No_inf pgKDN_inf METTL17 protein_coding protein_coding 49.12609 56.69767 39.57718 2.870335 2.964221 -0.5185106 4.185781 0.000000 8.729801 0.000000 3.352814 9.7714566 0.10627500 0.000000 0.243200 0.243200 0.006072984 0.006072984 FALSE TRUE
ENST00000382985 ENSG00000165792 No_inf pgKDN_inf METTL17 protein_coding protein_coding 49.12609 56.69767 39.57718 2.870335 2.964221 -0.5185106 8.524520 5.415796 5.969040 3.832940 2.029509 0.1400790 0.17511667 0.102925 0.143375 0.040450 0.777011789 0.006072984 FALSE TRUE
ENST00000553389 ENSG00000165792 No_inf pgKDN_inf METTL17 protein_coding retained_intron 49.12609 56.69767 39.57718 2.870335 2.964221 -0.5185106 13.547119 17.882418 9.377350 1.870891 3.196975 -0.9305586 0.26809167 0.319100 0.222625 -0.096475 0.819241740 0.006072984 FALSE TRUE
ENST00000554283 ENSG00000165792 No_inf pgKDN_inf METTL17 protein_coding protein_coding 49.12609 56.69767 39.57718 2.870335 2.964221 -0.5185106 1.975085 1.011828 3.395988 1.011828 1.318620 1.7369215 0.04284167 0.018025 0.080700 0.062675 0.120860289 0.006072984 FALSE FALSE
ENST00000554849 ENSG00000165792 No_inf pgKDN_inf METTL17 protein_coding retained_intron 49.12609 56.69767 39.57718 2.870335 2.964221 -0.5185106 4.660425 5.534365 2.885590 2.382792 1.046466 -0.9371650 0.09084167 0.092075 0.072925 -0.019150 0.992698356 0.006072984 FALSE FALSE
ENST00000555533 ENSG00000165792 No_inf pgKDN_inf METTL17 protein_coding nonsense_mediated_decay 49.12609 56.69767 39.57718 2.870335 2.964221 -0.5185106 4.435470 8.329381 1.675793 2.829023 1.675793 -2.3065132 0.08017500 0.142325 0.036125 -0.106200 0.308752176 0.006072984 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000165792 E001 0.1176306 0.0118756895 0.341502749   14 20989973 20989979 7 + 0.115 0.000 -11.099
ENSG00000165792 E002 0.1176306 0.0118756895 0.341502749   14 20989980 20989986 7 + 0.115 0.000 -11.102
ENSG00000165792 E003 1.4682954 0.0091607612 0.455351315 0.72786253 14 20989987 20989993 7 + 0.451 0.339 -0.630
ENSG00000165792 E004 2.3022058 0.0063733333 0.037792535 0.18760263 14 20989994 20989995 2 + 0.668 0.376 -1.408
ENSG00000165792 E005 2.9179644 0.0050435564 0.061987703 0.25012077 14 20989996 20989998 3 + 0.721 0.472 -1.115
ENSG00000165792 E006 3.0455439 0.0046991555 0.094170571 0.31933404 14 20989999 20990001 3 + 0.721 0.500 -0.978
ENSG00000165792 E007 3.0455439 0.0046991555 0.094170571 0.31933404 14 20990002 20990002 1 + 0.721 0.500 -0.978
ENSG00000165792 E008 6.2608594 0.0040769205 0.266673518 0.56007881 14 20990003 20990029 27 + 0.919 0.800 -0.460
ENSG00000165792 E009 6.2608594 0.0040769205 0.266673518 0.56007881 14 20990030 20990031 2 + 0.919 0.800 -0.460
ENSG00000165792 E010 6.3881217 0.0094593117 0.337981407 0.62979164 14 20990032 20990035 4 + 0.919 0.814 -0.408
ENSG00000165792 E011 6.6237638 0.0178078279 0.233414887 0.52230007 14 20990036 20990042 7 + 0.950 0.814 -0.523
ENSG00000165792 E012 7.2498792 0.0203133599 0.375150258 0.66272191 14 20990043 20990047 5 + 0.965 0.863 -0.385
ENSG00000165792 E013 9.1366309 0.0060840804 0.987195982 0.99963779 14 20990048 20990077 30 + 0.993 0.994 0.004
ENSG00000165792 E014 3.2476685 0.0047841368 0.083101989 0.29709200 14 20990078 20990229 152 + 0.451 0.693 1.107
ENSG00000165792 E015 8.7927024 0.0018870653 0.485637553 0.74942420 14 20990230 20990262 33 + 0.935 1.002 0.250
ENSG00000165792 E016 17.9155736 0.0080116077 0.052826301 0.22844241 14 20990263 20990383 121 + 1.349 1.203 -0.512
ENSG00000165792 E017 1.7494180 0.0078927109 0.158637822 0.42575389 14 20990384 20990463 80 + 0.282 0.500 1.244
ENSG00000165792 E018 19.7516876 0.0052655173 0.027118466 0.15307246 14 20990464 20990546 83 + 1.394 1.239 -0.541
ENSG00000165792 E019 15.7367341 0.0010074754 0.161121605 0.42925546 14 20990547 20990568 22 + 1.271 1.169 -0.359
ENSG00000165792 E020 12.5640867 0.0014027629 0.424103265 0.70326166 14 20990569 20990575 7 + 1.158 1.094 -0.231
ENSG00000165792 E021 14.7714085 0.0009262746 0.358693888 0.64815819 14 20990576 20990598 23 + 1.226 1.158 -0.243
ENSG00000165792 E022 0.1170040 0.0117128835 0.341609326   14 20990599 20990732 134 + 0.115 0.000 -11.102
ENSG00000165792 E023 0.6157898 0.2991937173 0.860968960 0.95185395 14 20991753 20992091 339 + 0.207 0.201 -0.046
ENSG00000165792 E024 6.9813390 0.0439353971 0.080399404 0.29112195 14 20992092 20992123 32 + 0.721 0.967 0.954
ENSG00000165792 E025 20.7238882 0.0007370533 0.020597570 0.12931083 14 20992124 20992205 82 + 1.409 1.263 -0.510
ENSG00000165792 E026 0.2539903 0.0160525834 0.432543516   14 20992206 20992304 99 + 0.000 0.144 10.737
ENSG00000165792 E027 17.8733955 0.0008899158 0.717917086 0.88650726 14 20992541 20992622 82 + 1.278 1.253 -0.086
ENSG00000165792 E028 5.7566705 0.0024701521 0.004373376 0.04518431 14 20992623 20993117 495 + 0.573 0.918 1.409
ENSG00000165792 E029 17.6562975 0.0008185715 0.848862680 0.94642935 14 20993118 20993172 55 + 1.249 1.263 0.048
ENSG00000165792 E030 10.6203533 0.0016441467 0.868911032 0.95488787 14 20993173 20993191 19 + 1.043 1.058 0.054
ENSG00000165792 E031 19.9048865 0.0053191247 0.005771048 0.05488550 14 20993192 20993968 777 + 1.167 1.373 0.724
ENSG00000165792 E032 20.4584689 0.0033730378 0.664583334 0.86059139 14 20993969 20994063 95 + 1.337 1.307 -0.103
ENSG00000165792 E033 20.2091181 0.0009501734 0.560118679 0.80074253 14 20994543 20994613 71 + 1.337 1.299 -0.133
ENSG00000165792 E034 18.9407548 0.0024679751 0.322967849 0.61577163 14 20994794 20994847 54 + 1.242 1.311 0.244
ENSG00000165792 E035 22.1281960 0.0128672202 0.575339416 0.80983261 14 20994848 20994901 54 + 1.324 1.366 0.146
ENSG00000165792 E036 32.1580165 0.0004586742 0.002759877 0.03242946 14 20994902 20995116 215 + 1.399 1.561 0.558
ENSG00000165792 E037 15.9232428 0.0009705453 0.008266105 0.07068719 14 20995117 20995164 48 + 1.078 1.281 0.724
ENSG00000165792 E038 15.2071221 0.0095043000 0.592287309 0.81994979 14 20995165 20995233 69 + 1.167 1.213 0.164
ENSG00000165792 E039 0.0000000       14 20995901 20995929 29 +      
ENSG00000165792 E040 0.0000000       14 20995930 20995951 22 +      
ENSG00000165792 E041 0.0000000       14 20995952 20996208 257 +      
ENSG00000165792 E042 0.0000000       14 20996209 20996292 84 +      
ENSG00000165792 E043 34.4610426 0.0085539306 0.818520191 0.93393975 14 20996527 20996711 185 + 1.526 1.542 0.054
ENSG00000165792 E044 9.4215607 0.0029244624 0.260427160 0.55307465 14 20996712 20996784 73 + 0.935 1.043 0.398
ENSG00000165792 E045 8.0425362 0.0074456921 0.542472666 0.78972470 14 20996785 20996811 27 + 0.903 0.967 0.239
ENSG00000165792 E046 3.2198514 0.0476812774 0.684939810 0.86966297 14 20996812 20996884 73 + 0.573 0.638 0.287
ENSG00000165792 E047 0.0000000       14 20996885 20997035 151 +      

Help

Please Click HERE to learn more details about the results from DEXseq.