ENSG00000165915

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000354884 ENSG00000165915 No_inf pgKDN_inf SLC39A13 protein_coding protein_coding 84.77602 42.92344 92.86975 1.319201 2.807509 1.113262 4.001151 0.000000 7.845645 0.0000000 7.845645 9.6175860 0.03945000 0.000000 0.080950 0.080950 1.000000e+00 4.32407e-11 FALSE TRUE
ENST00000524886 ENSG00000165915 No_inf pgKDN_inf SLC39A13 protein_coding protein_coding_CDS_not_defined 84.77602 42.92344 92.86975 1.319201 2.807509 1.113262 2.693872 4.768672 0.000000 0.4860096 0.000000 -8.9004660 0.04608333 0.112175 0.000000 -0.112175 4.324070e-11 4.32407e-11 FALSE FALSE
ENST00000527829 ENSG00000165915 No_inf pgKDN_inf SLC39A13 protein_coding protein_coding_CDS_not_defined 84.77602 42.92344 92.86975 1.319201 2.807509 1.113262 7.939014 2.952155 8.454784 1.2838385 1.283786 1.5148258 0.08746667 0.066450 0.090725 0.024275 8.229988e-01 4.32407e-11   FALSE
ENST00000529740 ENSG00000165915 No_inf pgKDN_inf SLC39A13 protein_coding protein_coding_CDS_not_defined 84.77602 42.92344 92.86975 1.319201 2.807509 1.113262 3.054633 3.173241 1.070057 1.0656686 1.070057 -1.5593887 0.04186667 0.074500 0.010950 -0.063550 2.334819e-01 4.32407e-11 FALSE TRUE
MSTRG.4713.2 ENSG00000165915 No_inf pgKDN_inf SLC39A13 protein_coding   84.77602 42.92344 92.86975 1.319201 2.807509 1.113262 50.952742 21.235868 61.370252 0.4158988 8.134205 1.5305923 0.58430833 0.496200 0.666550 0.170350 3.802945e-01 4.32407e-11 FALSE TRUE
MSTRG.4713.5 ENSG00000165915 No_inf pgKDN_inf SLC39A13 protein_coding   84.77602 42.92344 92.86975 1.319201 2.807509 1.113262 7.819140 4.952587 6.865138 1.6874179 1.108993 0.4702962 0.09615000 0.113925 0.074425 -0.039500 9.601360e-01 4.32407e-11 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000165915 E001 0.1187032 0.0117992970 1.000000e+00   11 47407132 47407533 402 + 0.065 0.000 -8.548
ENSG00000165915 E002 0.9728715 0.0169589657 6.880972e-01 8.715079e-01 11 47408552 47408583 32 + 0.258 0.324 0.453
ENSG00000165915 E003 0.9820948 0.0891347627 2.894528e-01 5.830787e-01 11 47408584 47408589 6 + 0.217 0.394 1.189
ENSG00000165915 E004 1.8610670 0.0285114317 6.575165e-03 6.031310e-02 11 47408590 47408604 15 + 0.258 0.672 2.190
ENSG00000165915 E005 3.4404153 0.0052481950 1.369979e-02 9.862316e-02 11 47408605 47408627 23 + 0.492 0.816 1.396
ENSG00000165915 E006 3.4226327 0.0053360572 8.716525e-02 3.059696e-01 11 47408628 47408630 3 + 0.535 0.764 0.984
ENSG00000165915 E007 9.5583193 0.0030433805 6.836282e-01 8.690488e-01 11 47408631 47408662 32 + 0.982 1.026 0.162
ENSG00000165915 E008 0.3526461 0.0292620755 3.859840e-01   11 47409591 47409663 73 + 0.172 0.000 -12.191
ENSG00000165915 E009 0.3642603 0.1904191806 8.995606e-01   11 47409821 47409965 145 + 0.122 0.137 0.189
ENSG00000165915 E010 0.0000000       11 47410066 47410084 19 +      
ENSG00000165915 E011 0.1186381 0.0118688456 1.000000e+00   11 47410085 47410086 2 + 0.065 0.000 -10.838
ENSG00000165915 E012 52.9870762 0.0003414702 8.412039e-01 9.430543e-01 11 47410087 47410395 309 + 1.704 1.700 -0.012
ENSG00000165915 E013 36.0735206 0.0004296854 6.227039e-01 8.374872e-01 11 47411926 47412039 114 + 1.546 1.525 -0.072
ENSG00000165915 E014 7.0634698 0.0495514086 1.697978e-01 4.418543e-01 11 47412040 47412301 262 + 0.814 0.995 0.687
ENSG00000165915 E015 2.3342142 0.0561335022 7.711745e-02 2.840631e-01 11 47412302 47412345 44 + 0.391 0.672 1.342
ENSG00000165915 E016 47.8696251 0.0006653994 3.347268e-02 1.740734e-01 11 47412346 47412467 122 + 1.688 1.592 -0.328
ENSG00000165915 E017 52.6521570 0.0002670411 6.025659e-03 5.666746e-02 11 47413400 47413507 108 + 1.735 1.616 -0.404
ENSG00000165915 E018 48.2617572 0.0003157882 5.550940e-02 2.346946e-01 11 47413597 47413686 90 + 1.688 1.604 -0.287
ENSG00000165915 E019 35.9103751 0.0070254521 5.151925e-10 4.646554e-08 11 47413687 47414295 609 + 1.380 1.755 1.279
ENSG00000165915 E020 10.5746242 0.0182630744 7.035668e-02 2.684174e-01 11 47414296 47414424 129 + 0.967 1.156 0.688
ENSG00000165915 E021 29.2739819 0.0011623922 3.573992e-01 6.470182e-01 11 47414425 47414436 12 + 1.468 1.417 -0.174
ENSG00000165915 E022 34.4980452 0.0004361280 6.155244e-01 8.331583e-01 11 47414437 47414475 39 + 1.528 1.506 -0.076
ENSG00000165915 E023 1.6975223 0.2278731166 8.327820e-01 9.396922e-01 11 47414476 47414776 301 + 0.391 0.455 0.343
ENSG00000165915 E024 41.9461801 0.0003513901 2.901149e-01 5.837583e-01 11 47414777 47414861 85 + 1.618 1.571 -0.161
ENSG00000165915 E025 28.2356384 0.0006156025 5.776444e-01 8.112922e-01 11 47414862 47414905 44 + 1.446 1.417 -0.098
ENSG00000165915 E026 16.8905822 0.0008167313 7.104943e-01 8.829636e-01 11 47414906 47414909 4 + 1.232 1.208 -0.082
ENSG00000165915 E027 3.3869598 0.0149082467 1.821438e-07 1.002423e-05 11 47414910 47415038 129 + 0.258 0.961 3.327
ENSG00000165915 E028 1.9933623 0.0781512132 1.420753e-03 1.962693e-02 11 47415039 47415059 21 + 0.217 0.735 2.775
ENSG00000165915 E029 46.2912150 0.0006350401 6.341606e-01 8.436392e-01 11 47415060 47415159 100 + 1.636 1.664 0.093
ENSG00000165915 E030 9.0826272 0.0017334441 4.693461e-01 7.374131e-01 11 47415160 47415287 128 + 0.951 1.026 0.276
ENSG00000165915 E031 105.8900206 0.0001608255 9.683379e-01 9.936412e-01 11 47415288 47415496 209 + 1.998 2.002 0.014
ENSG00000165915 E032 315.1390711 0.0000818892 2.097417e-01 4.942084e-01 11 47415497 47416324 828 + 2.474 2.460 -0.047
ENSG00000165915 E033 37.7107547 0.0003796466 2.519501e-01 5.431994e-01 11 47416325 47416678 354 + 1.575 1.521 -0.187

Help

Please Click HERE to learn more details about the results from DEXseq.