ENSG00000166479

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000299608 ENSG00000166479 No_inf pgKDN_inf TMX3 protein_coding protein_coding 42.32534 34.46243 49.37196 1.287099 2.142935 0.5185411 22.754073 9.600659 32.825118 3.2195605 1.4467710 1.7725324 0.51670000 0.273500 0.669275 0.395775 0.22136598 0.04961252 FALSE TRUE
ENST00000578816 ENSG00000166479 No_inf pgKDN_inf TMX3 protein_coding retained_intron 42.32534 34.46243 49.37196 1.287099 2.142935 0.5185411 2.020897 0.000000 3.029244 0.0000000 3.0292442 8.2475688 0.03777500 0.000000 0.055100 0.055100 0.87031495 0.04961252   FALSE
MSTRG.14036.2 ENSG00000166479 No_inf pgKDN_inf TMX3 protein_coding   42.32534 34.46243 49.37196 1.287099 2.142935 0.5185411 5.381106 5.908625 4.989895 0.3508189 0.8583310 -0.2433640 0.13152500 0.172500 0.100225 -0.072275 0.47819626 0.04961252 FALSE TRUE
MSTRG.14036.4 ENSG00000166479 No_inf pgKDN_inf TMX3 protein_coding   42.32534 34.46243 49.37196 1.287099 2.142935 0.5185411 4.277589 9.354487 2.489088 1.1590934 0.8525102 -1.9057980 0.11585833 0.269825 0.052300 -0.217525 0.04961252 0.04961252 FALSE TRUE
MSTRG.14036.5 ENSG00000166479 No_inf pgKDN_inf TMX3 protein_coding   42.32534 34.46243 49.37196 1.287099 2.142935 0.5185411 1.261198 3.080811 0.000000 3.0808114 0.0000000 -8.2718418 0.03754167 0.096075 0.000000 -0.096075 0.83695530 0.04961252 FALSE TRUE
MSTRG.14036.7 ENSG00000166479 No_inf pgKDN_inf TMX3 protein_coding   42.32534 34.46243 49.37196 1.287099 2.142935 0.5185411 2.909652 3.212486 2.123033 0.1868293 0.2338464 -0.5952675 0.07212500 0.093675 0.043775 -0.049900 0.41196447 0.04961252 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000166479 E001 2.3407851 0.0059654517 3.035111e-01 5.968631e-01 18 68673688 68673693 6 - 0.447 0.594 0.702
ENSG00000166479 E002 620.4305395 0.0010537726 4.341078e-01 7.113438e-01 18 68673694 68676709 3016 - 2.788 2.799 0.036
ENSG00000166479 E003 39.3680189 0.0020785722 4.320118e-01 7.095260e-01 18 68676710 68676838 129 - 1.623 1.586 -0.125
ENSG00000166479 E004 53.1313056 0.0002835152 2.699590e-01 5.635753e-01 18 68676839 68677027 189 - 1.753 1.710 -0.143
ENSG00000166479 E005 47.2346290 0.0004523615 1.180016e-01 3.628034e-01 18 68677028 68677193 166 - 1.713 1.647 -0.222
ENSG00000166479 E006 28.5981502 0.0004699673 1.490629e-01 4.113149e-01 18 68679463 68679531 69 - 1.506 1.429 -0.266
ENSG00000166479 E007 0.0000000       18 68679532 68679577 46 -      
ENSG00000166479 E008 34.2489977 0.0004772414 4.633035e-01 7.332534e-01 18 68680981 68681110 130 - 1.563 1.528 -0.118
ENSG00000166479 E009 0.8785330 0.0124148983 3.033046e-02 1.638676e-01 18 68681293 68681322 30 - 0.088 0.415 2.828
ENSG00000166479 E010 0.3812526 0.0158451082 7.544977e-02   18 68681509 68681545 37 - 0.000 0.255 11.931
ENSG00000166479 E011 17.7420872 0.0008995046 3.756948e-01 6.630972e-01 18 68682925 68682981 57 - 1.241 1.305 0.223
ENSG00000166479 E012 14.2206856 0.0013254506 2.954960e-01 5.886983e-01 18 68684190 68684243 54 - 1.141 1.223 0.293
ENSG00000166479 E013 12.3127709 0.0714163759 9.410870e-01 9.834070e-01 18 68684428 68684485 58 - 1.133 1.113 -0.072
ENSG00000166479 E014 16.6764530 0.0008388928 3.971001e-01 6.814558e-01 18 68687667 68687756 90 - 1.274 1.216 -0.203
ENSG00000166479 E015 9.9715059 0.0015732417 3.020705e-01 5.952456e-01 18 68687757 68687763 7 - 1.080 0.991 -0.328
ENSG00000166479 E016 8.8562645 0.0015892692 1.248682e-01 3.746046e-01 18 68687764 68687765 2 - 1.055 0.913 -0.526
ENSG00000166479 E017 16.6257550 0.0022264620 4.467405e-03 4.579833e-02 18 68687766 68688200 435 - 1.134 1.343 0.739
ENSG00000166479 E018 11.2107522 0.0419477270 1.028775e-01 3.353132e-01 18 68688201 68688416 216 - 0.980 1.179 0.724
ENSG00000166479 E019 7.9485516 0.0271859807 8.398276e-04 1.310248e-02 18 68688417 68688539 123 - 0.722 1.113 1.487
ENSG00000166479 E020 33.0448799 0.0004354485 6.022311e-10 5.359857e-08 18 68688540 68689054 515 - 1.345 1.673 1.123
ENSG00000166479 E021 15.1620785 0.0018038281 2.169443e-07 1.167732e-05 18 68689055 68689686 632 - 0.970 1.373 1.443
ENSG00000166479 E022 6.4675628 0.0021958492 2.751495e-04 5.419222e-03 18 68689687 68689947 261 - 0.641 1.035 1.545
ENSG00000166479 E023 3.0089837 0.0049014522 1.773839e-04 3.793428e-03 18 68689948 68689981 34 - 0.279 0.801 2.565
ENSG00000166479 E024 2.9835189 0.0080887132 1.609062e-02 1.100750e-01 18 68691014 68691294 281 - 0.411 0.742 1.523
ENSG00000166479 E025 14.0337236 0.0030696238 9.088168e-03 7.552562e-02 18 68691295 68691361 67 - 1.263 1.056 -0.739
ENSG00000166479 E026 1.0706525 0.0115534544 2.575069e-02 1.482534e-01 18 68696936 68697225 290 - 0.447 0.103 -2.757
ENSG00000166479 E027 16.2384682 0.0011620122 1.887862e-02 1.222109e-01 18 68697226 68697303 78 - 1.309 1.139 -0.599
ENSG00000166479 E028 0.3544103 0.0308147150 1.407102e-01   18 68697376 68697930 555 - 0.224 0.000 -12.210
ENSG00000166479 E029 0.1186381 0.0117882147 6.318636e-01   18 68697931 68697931 1 - 0.088 0.000 -10.838
ENSG00000166479 E030 22.0879143 0.0006259288 8.616542e-01 9.521504e-01 18 68697932 68698031 100 - 1.367 1.359 -0.029
ENSG00000166479 E031 21.7068673 0.0008829882 6.777330e-01 8.665696e-01 18 68700405 68700485 81 - 1.367 1.343 -0.083
ENSG00000166479 E032 1.4964690 0.0232284528 4.747291e-02 2.141522e-01 18 68701616 68701667 52 - 0.224 0.531 1.828
ENSG00000166479 E033 15.6846717 0.0088359055 1.941649e-01 4.739571e-01 18 68701745 68701790 46 - 1.268 1.164 -0.370
ENSG00000166479 E034 0.0000000       18 68706280 68706408 129 -      
ENSG00000166479 E035 28.3105966 0.0004895980 2.414290e-02 1.423528e-01 18 68710021 68710144 124 - 1.521 1.397 -0.425
ENSG00000166479 E036 15.9188502 0.0008186345 5.944274e-05 1.536169e-03 18 68711364 68711403 40 - 1.345 1.046 -1.064
ENSG00000166479 E037 11.6760111 0.0013538975 1.240411e-04 2.831160e-03 18 68713846 68713900 55 - 1.230 0.899 -1.207
ENSG00000166479 E038 0.1187032 0.0118065850 6.318017e-01   18 68714263 68714443 181 - 0.088 0.000 -10.838
ENSG00000166479 E039 13.2160050 0.0243153683 2.809204e-04 5.503509e-03 18 68714936 68715108 173 - 1.294 0.913 -1.377

Help

Please Click HERE to learn more details about the results from DEXseq.