ENSG00000166783

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000396368 ENSG00000166783 No_inf pgKDN_inf MARF1 protein_coding protein_coding 18.72647 24.94392 17.29579 0.4420872 0.7353628 -0.5280118 5.1477071 5.305410 6.085106 0.1866412 0.5529834 0.1974704 0.28735000 0.212775 0.357150 0.144375 0.4224421716 0.0006212887 FALSE  
ENST00000551678 ENSG00000166783 No_inf pgKDN_inf MARF1 protein_coding protein_coding_CDS_not_defined 18.72647 24.94392 17.29579 0.4420872 0.7353628 -0.5280118 0.4299017 0.000000 1.289705 0.0000000 0.2391616 7.0220406 0.02444167 0.000000 0.073325 0.073325 0.0006212887 0.0006212887 FALSE  
ENST00000552771 ENSG00000166783 No_inf pgKDN_inf MARF1 protein_coding retained_intron 18.72647 24.94392 17.29579 0.4420872 0.7353628 -0.5280118 2.2942624 4.659815 1.152209 0.6623722 0.1307227 -2.0064958 0.10987500 0.187650 0.067025 -0.120625 0.2136057362 0.0006212887    
MSTRG.10709.5 ENSG00000166783 No_inf pgKDN_inf MARF1 protein_coding   18.72647 24.94392 17.29579 0.4420872 0.7353628 -0.5280118 9.2085672 11.870207 7.905515 0.6101927 0.7853859 -0.5858048 0.49829167 0.475850 0.455475 -0.020375 0.9566099814 0.0006212887 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000166783 E001 0.3804973 0.0158681090 2.028789e-01   16 15594387 15594387 1 - 0.000 0.206 11.374
ENSG00000166783 E002 0.3804973 0.0158681090 2.028789e-01   16 15594388 15594391 4 - 0.000 0.206 13.714
ENSG00000166783 E003 242.9565529 0.0000988104 1.995222e-06 8.479928e-05 16 15594392 15596170 1779 - 2.325 2.405 0.267
ENSG00000166783 E004 57.3797894 0.0002945884 8.960996e-02 3.110654e-01 16 15596171 15596634 464 - 1.712 1.780 0.233
ENSG00000166783 E005 13.7080960 0.0022803637 7.311059e-01 8.932179e-01 16 15596635 15596692 58 - 1.139 1.168 0.104
ENSG00000166783 E006 12.4838770 0.0012384648 5.735073e-01 8.088792e-01 16 15596693 15596766 74 - 1.089 1.137 0.172
ENSG00000166783 E007 20.4104006 0.0006891344 2.893256e-01 5.829441e-01 16 15596767 15596937 171 - 1.274 1.346 0.250
ENSG00000166783 E008 12.9260091 0.0014403587 6.077196e-01 8.291533e-01 16 15598854 15598921 68 - 1.157 1.118 -0.142
ENSG00000166783 E009 15.1767757 0.0009573378 7.609436e-01 9.065609e-01 16 15598922 15599024 103 - 1.183 1.208 0.087
ENSG00000166783 E010 0.4982566 0.0157248159 5.412900e-01   16 15599025 15599117 93 - 0.113 0.206 1.028
ENSG00000166783 E011 0.0000000       16 15599118 15599171 54 -      
ENSG00000166783 E012 15.1296669 0.0009322285 8.418550e-02 2.996213e-01 16 15600428 15600553 126 - 1.110 1.244 0.478
ENSG00000166783 E013 1.3965542 0.0979144237 4.424983e-03 4.551061e-02 16 15600554 15600640 87 - 0.000 0.508 15.174
ENSG00000166783 E014 9.0132638 0.0017637516 9.097136e-01 9.713623e-01 16 15600641 15600701 61 - 0.983 0.995 0.044
ENSG00000166783 E015 8.6037995 0.0068535756 8.551179e-03 7.228829e-02 16 15600702 15601863 1162 - 0.782 1.060 1.056
ENSG00000166783 E016 12.9619722 0.0011408890 7.820645e-01 9.161825e-01 16 15601991 15602127 137 - 1.120 1.143 0.085
ENSG00000166783 E017 10.9948638 0.0013601810 6.774637e-01 8.663504e-01 16 15602128 15602203 76 - 1.045 1.083 0.137
ENSG00000166783 E018 23.2177498 0.0006151920 1.514864e-01 4.149013e-01 16 15604168 15604398 231 - 1.424 1.338 -0.297
ENSG00000166783 E019 0.5076982 0.2211987566 1.571553e-01 4.236737e-01 16 15605848 15606114 267 - 0.000 0.257 13.673
ENSG00000166783 E020 18.3495357 0.0050195588 6.541227e-01 8.548223e-01 16 15608291 15608518 228 - 1.295 1.264 -0.108
ENSG00000166783 E021 0.0000000       16 15609523 15609523 1 -      
ENSG00000166783 E022 12.0582357 0.0011499006 4.838451e-01 7.482668e-01 16 15609524 15609725 202 - 1.139 1.083 -0.202
ENSG00000166783 E023 5.6277151 0.0065470004 1.178300e-01 3.625675e-01 16 15610975 15611029 55 - 0.910 0.736 -0.683
ENSG00000166783 E024 8.1116622 0.0385174076 4.090784e-01 6.913322e-01 16 15611030 15611108 79 - 1.009 0.907 -0.382
ENSG00000166783 E025 11.3311840 0.0012488946 6.962245e-01 8.760405e-01 16 15611592 15611734 143 - 1.100 1.068 -0.115
ENSG00000166783 E026 10.1839230 0.0013744557 2.255668e-01 5.133215e-01 16 15612557 15612705 149 - 1.100 0.995 -0.383
ENSG00000166783 E027 5.1472625 0.0032321640 3.480914e-01 6.385701e-01 16 15612706 15612777 72 - 0.841 0.736 -0.420
ENSG00000166783 E028 9.6126165 0.0087253047 9.102426e-01 9.715752e-01 16 15615830 15616005 176 - 1.021 1.012 -0.034
ENSG00000166783 E029 0.1186381 0.0117906978 3.599006e-01   16 15616785 15617051 267 - 0.113 0.000 -13.768
ENSG00000166783 E030 8.3502093 0.0027525122 3.908372e-01 6.761266e-01 16 15617052 15617171 120 - 1.009 0.928 -0.302
ENSG00000166783 E031 0.5082940 0.1860228207 1.486408e-01 4.106543e-01 16 15617172 15617298 127 - 0.000 0.257 13.722
ENSG00000166783 E032 12.2392807 0.0085267590 4.805706e-02 2.156690e-01 16 15617299 15617535 237 - 1.208 1.037 -0.615
ENSG00000166783 E033 0.4797824 0.0282351373 1.699562e-01   16 15619552 15619622 71 - 0.277 0.080 -2.142
ENSG00000166783 E034 3.8946399 0.0037060515 3.249913e-02 1.708223e-01 16 15620451 15620531 81 - 0.822 0.559 -1.105
ENSG00000166783 E035 0.5889799 0.0144762901 6.239285e-03 5.807898e-02 16 15621493 15621732 240 - 0.395 0.000 -15.917
ENSG00000166783 E036 8.8072253 0.0018771316 6.192916e-02 2.500253e-01 16 15621733 15621911 179 - 1.079 0.906 -0.637
ENSG00000166783 E037 6.4969081 0.0037187212 2.099342e-01 4.943689e-01 16 15622934 15623057 124 - 0.940 0.809 -0.503
ENSG00000166783 E038 4.0843803 0.0035038336 6.396073e-01 8.467293e-01 16 15623058 15623096 39 - 0.659 0.719 0.250
ENSG00000166783 E039 3.1911882 0.0046091368 5.550709e-01 7.977721e-01 16 15623097 15623123 27 - 0.659 0.583 -0.335
ENSG00000166783 E040 0.6346136 0.0142747036 5.616808e-02 2.363037e-01 16 15623124 15623126 3 - 0.000 0.303 14.394
ENSG00000166783 E041 0.3806233 0.0158259419 2.029968e-01   16 15623127 15623150 24 - 0.000 0.206 13.714
ENSG00000166783 E042 4.0396024 0.0333316192 2.533313e-01 5.448921e-01 16 15624769 15624927 159 - 0.782 0.626 -0.645
ENSG00000166783 E043 6.7728356 0.0024720696 6.275186e-01 8.399829e-01 16 15625016 15625173 158 - 0.910 0.861 -0.188
ENSG00000166783 E044 18.0473381 0.0042781860 1.283823e-01 3.799078e-01 16 15625372 15625797 426 - 1.332 1.224 -0.380
ENSG00000166783 E045 1.4556178 0.0955822144 2.717215e-01 5.654600e-01 16 15625798 15625800 3 - 0.488 0.303 -1.042
ENSG00000166783 E046 0.2455571 0.0161333385 7.620000e-01   16 15630234 15630331 98 - 0.113 0.080 -0.557
ENSG00000166783 E047 6.1535647 0.0185991370 8.343725e-01 9.403559e-01 16 15630332 15630504 173 - 0.859 0.836 -0.091
ENSG00000166783 E048 5.9046674 0.0024395874 6.383996e-01 8.459440e-01 16 15631381 15631498 118 - 0.859 0.809 -0.195
ENSG00000166783 E049 10.7129553 0.0013292645 9.668677e-04 1.463161e-02 16 15633617 15633834 218 - 1.208 0.928 -1.020
ENSG00000166783 E050 3.2829466 0.0042374212 5.084504e-02 2.230944e-01 16 15633835 15633843 9 - 0.760 0.508 -1.098
ENSG00000166783 E051 7.8196929 0.0018038313 4.138768e-02 1.975727e-01 16 15634757 15634931 175 - 1.045 0.848 -0.738
ENSG00000166783 E052 0.8793508 0.0175340002 1.397916e-01 3.976541e-01 16 15634932 15635655 724 - 0.113 0.345 2.028
ENSG00000166783 E053 11.0336009 0.0012624811 1.046276e-01 3.381104e-01 16 15635656 15635993 338 - 1.148 1.012 -0.493
ENSG00000166783 E054 10.4936558 0.0016929536 4.297683e-03 4.463532e-02 16 15635994 15636342 349 - 1.183 0.938 -0.894
ENSG00000166783 E055 5.7722677 0.0035630810 3.791025e-01 6.659668e-01 16 15639090 15639291 202 - 0.877 0.781 -0.373
ENSG00000166783 E056 0.1176306 0.0117303207 3.598289e-01   16 15642459 15642488 30 - 0.113 0.000 -13.768
ENSG00000166783 E057 1.3251070 0.0229391935 3.447588e-02 1.773181e-01 16 15643018 15643154 137 - 0.528 0.206 -1.972

Help

Please Click HERE to learn more details about the results from DEXseq.