ENSG00000166801

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000361723 ENSG00000166801 No_inf pgKDN_inf FAM111A protein_coding protein_coding 33.68466 36.05122 31.62256 1.48687 1.545224 -0.189038 8.1201622 6.009050 7.969723 3.4708345 3.985410 0.4068029 0.24543333 0.161450 0.263625 0.102175 8.532030e-01 5.075836e-06 FALSE TRUE
ENST00000528737 ENSG00000166801 No_inf pgKDN_inf FAM111A protein_coding protein_coding 33.68466 36.05122 31.62256 1.48687 1.545224 -0.189038 1.8300035 4.101295 0.000000 0.8918489 0.000000 -8.6834491 0.05109167 0.112600 0.000000 -0.112600 5.075836e-06 5.075836e-06 FALSE TRUE
ENST00000531147 ENSG00000166801 No_inf pgKDN_inf FAM111A protein_coding protein_coding 33.68466 36.05122 31.62256 1.48687 1.545224 -0.189038 5.1728851 7.481786 3.493708 0.2408850 1.140169 -1.0964271 0.15104167 0.208400 0.108950 -0.099450 4.414905e-01 5.075836e-06 FALSE TRUE
ENST00000531408 ENSG00000166801 No_inf pgKDN_inf FAM111A protein_coding protein_coding 33.68466 36.05122 31.62256 1.48687 1.545224 -0.189038 3.2952060 5.591155 1.567679 3.4203653 1.567679 -1.8279204 0.09709167 0.158025 0.052750 -0.105275 8.167692e-01 5.075836e-06 FALSE TRUE
ENST00000533703 ENSG00000166801 No_inf pgKDN_inf FAM111A protein_coding protein_coding 33.68466 36.05122 31.62256 1.48687 1.545224 -0.189038 3.3727321 3.482254 2.851453 1.1874210 0.986645 -0.2874104 0.10046667 0.099075 0.088500 -0.010575 1.000000e+00 5.075836e-06 FALSE TRUE
MSTRG.4765.22 ENSG00000166801 No_inf pgKDN_inf FAM111A protein_coding   33.68466 36.05122 31.62256 1.48687 1.545224 -0.189038 2.3800347 0.000000 5.295143 0.0000000 5.295143 9.0512477 0.06686667 0.000000 0.146125 0.146125 8.372982e-01 5.075836e-06 FALSE TRUE
MSTRG.4765.25 ENSG00000166801 No_inf pgKDN_inf FAM111A protein_coding   33.68466 36.05122 31.62256 1.48687 1.545224 -0.189038 0.9574038 0.000000 2.404883 0.0000000 1.469195 7.9158095 0.03124167 0.000000 0.079675 0.079675 4.595206e-01 5.075836e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000166801 E001 0.0000000       11 59142748 59142750 3 +      
ENSG00000166801 E002 0.0000000       11 59142751 59142789 39 +      
ENSG00000166801 E003 0.0000000       11 59142790 59142838 49 +      
ENSG00000166801 E004 0.0000000       11 59142839 59142848 10 +      
ENSG00000166801 E005 0.0000000       11 59142849 59142855 7 +      
ENSG00000166801 E006 0.0000000       11 59142856 59142857 2 +      
ENSG00000166801 E007 0.0000000       11 59142858 59142858 1 +      
ENSG00000166801 E008 0.0000000       11 59142859 59142859 1 +      
ENSG00000166801 E009 0.0000000       11 59142860 59142883 24 +      
ENSG00000166801 E010 0.0000000       11 59142884 59142910 27 +      
ENSG00000166801 E011 0.0000000       11 59142911 59142915 5 +      
ENSG00000166801 E012 0.0000000       11 59142916 59142946 31 +      
ENSG00000166801 E013 0.0000000       11 59142947 59142969 23 +      
ENSG00000166801 E014 5.9317571 0.0026194656 4.704260e-01 0.7381210934 11 59143083 59143304 222 + 0.795 0.856 0.237
ENSG00000166801 E015 1.1167855 0.0122625287 5.706120e-01 0.8070115406 11 59143305 59143330 26 + 0.273 0.349 0.500
ENSG00000166801 E016 2.1220767 0.0880266258 1.661259e-01 0.4362293912 11 59143331 59143496 166 + 0.335 0.565 1.200
ENSG00000166801 E017 10.5401943 0.0014020764 6.742510e-02 0.2619572530 11 59143497 59143695 199 + 0.961 1.105 0.525
ENSG00000166801 E018 25.9986655 0.0006029592 1.433667e-05 0.0004658036 11 59143696 59144537 842 + 1.260 1.503 0.846
ENSG00000166801 E019 6.5155889 0.1353199136 3.615397e-02 0.1825604577 11 59144538 59144743 206 + 0.592 0.984 1.570
ENSG00000166801 E020 2.8679952 0.0951201320 1.954134e-01 0.4757991414 11 59144744 59144778 35 + 0.439 0.653 1.002
ENSG00000166801 E021 2.4671348 0.0833084723 8.633066e-01 0.9527895762 11 59144779 59144798 20 + 0.522 0.540 0.085
ENSG00000166801 E022 1.9674650 0.0157525099 9.346680e-01 0.9811853541 11 59144799 59144808 10 + 0.483 0.455 -0.138
ENSG00000166801 E023 3.6659255 0.0037452715 2.467160e-01 0.5373058624 11 59144809 59144861 53 + 0.753 0.589 -0.693
ENSG00000166801 E024 4.6373473 0.0043716911 1.259789e-01 0.3763041828 11 59144862 59144896 35 + 0.852 0.653 -0.805
ENSG00000166801 E025 1.2435423 0.1647645216 5.332260e-01 0.7837524379 11 59144897 59144900 4 + 0.273 0.387 0.721
ENSG00000166801 E026 1.6081758 0.0091335378 7.590071e-01 0.9053787101 11 59144901 59144922 22 + 0.390 0.423 0.178
ENSG00000166801 E027 3.9826059 0.0035637363 9.176490e-02 0.3145575186 11 59144923 59145061 139 + 0.559 0.758 0.853
ENSG00000166801 E028 0.8807354 0.0128376353 1.099708e-01 0.3480759233 11 59145062 59145062 1 + 0.111 0.349 2.084
ENSG00000166801 E029 5.9535049 0.0205549826 2.302857e-01 0.5188490387 11 59145063 59145398 336 + 0.753 0.880 0.499
ENSG00000166801 E030 2.7099887 0.0055730422 8.678391e-01 0.9546991047 11 59145399 59145419 21 + 0.559 0.565 0.030
ENSG00000166801 E031 21.6614877 0.0006387664 3.532939e-05 0.0009919067 11 59145420 59145826 407 + 1.175 1.430 0.892
ENSG00000166801 E032 8.8101181 0.0493567671 2.669858e-01 0.5602397795 11 59145827 59145856 30 + 1.071 0.914 -0.581
ENSG00000166801 E033 12.6906305 0.0302726876 2.643653e-02 0.1506770230 11 59148245 59148703 459 + 0.989 1.199 0.762
ENSG00000166801 E034 3.2114150 0.0044336441 6.658474e-01 0.8610318840 11 59148704 59148726 23 + 0.592 0.633 0.178
ENSG00000166801 E035 4.6096074 0.0047141402 5.232840e-02 0.2272733242 11 59148727 59148796 70 + 0.592 0.817 0.932
ENSG00000166801 E036 7.1138660 0.0123695982 4.189649e-01 0.6987152826 11 59148797 59148835 39 + 0.962 0.856 -0.401
ENSG00000166801 E037 20.2501568 0.0007389629 1.696330e-03 0.0224735544 11 59148836 59148953 118 + 1.439 1.216 -0.779
ENSG00000166801 E038 1.6164864 0.0200062036 3.927161e-01 0.6777323225 11 59148954 59149179 226 + 0.335 0.455 0.670
ENSG00000166801 E039 545.0713364 0.0025587104 2.030471e-05 0.0006252049 11 59151750 59155040 3291 + 2.761 2.704 -0.189

Help

Please Click HERE to learn more details about the results from DEXseq.