ENSG00000166902

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000300151 ENSG00000166902 No_inf pgKDN_inf MRPL16 protein_coding protein_coding 29.70723 28.9508 29.92286 1.03893 1.557525 0.04762848 28.33566 26.29067 29.43068 1.002507 1.301694 0.1627116 0.9538417 0.9083 0.98475 0.07645 0.006747287 0.006747287 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000166902 E001 49.2810308 0.0003143716 0.082809945 0.29656518 11 59806140 59806534 395 - 1.728 1.675 -0.180
ENSG00000166902 E002 51.2603338 0.0003266905 0.102242434 0.33417625 11 59806535 59806832 298 - 1.681 1.748 0.226
ENSG00000166902 E003 1.1436630 0.0130643754 0.001373636 0.01913864 11 59807236 59807700 465 - 0.000 0.500 12.836
ENSG00000166902 E004 27.6871764 0.0005619304 0.613845973 0.83211020 11 59807701 59807849 149 - 1.466 1.449 -0.058
ENSG00000166902 E005 0.8881309 0.0187609784 0.005717844 0.05452372 11 59808733 59808872 140 - 0.000 0.428 12.473
ENSG00000166902 E006 0.8781861 0.0265010565 0.061870066 0.24988020 11 59809534 59809854 321 - 0.097 0.387 2.527
ENSG00000166902 E007 14.9232373 0.0009599849 0.359728339 0.64921855 11 59809855 59809920 66 - 1.230 1.174 -0.200
ENSG00000166902 E008 0.2459004 0.0163574570 0.961132533   11 59809921 59810022 102 - 0.097 0.093 -0.058
ENSG00000166902 E009 0.6163305 0.0148105815 0.706099437 0.88067710 11 59810240 59810300 61 - 0.176 0.235 0.527
ENSG00000166902 E010 19.1205782 0.0007443942 0.811741964 0.93070772 11 59810604 59810778 175 - 1.306 1.300 -0.021

Help

Please Click HERE to learn more details about the results from DEXseq.