ENSG00000167004

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000300289 ENSG00000167004 No_inf pgKDN_inf PDIA3 protein_coding protein_coding 769.7011 603.3972 804.3943 12.31488 7.82857 0.4147888 135.1969 122.62991 141.6407 1.984015 2.724815 0.2079091 0.1788750 0.203375 0.176250 -0.027125 0.474332937 1.508251e-34 FALSE  
ENST00000686374 ENSG00000167004 No_inf pgKDN_inf PDIA3 protein_coding retained_intron 769.7011 603.3972 804.3943 12.31488 7.82857 0.4147888 435.9042 367.08302 438.1736 10.135417 5.322364 0.2553899 0.5700083 0.608100 0.544725 -0.063375 0.009331414 1.508251e-34 FALSE  
ENST00000686929 ENSG00000167004 No_inf pgKDN_inf PDIA3 protein_coding protein_coding 769.7011 603.3972 804.3943 12.31488 7.82857 0.4147888 118.7293 82.86885 137.8131 4.443616 3.394203 0.7337416 0.1529417 0.137100 0.171300 0.034200 0.242766247 1.508251e-34 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000167004 E001 2.9650478 7.981701e-03 0.115333510 0.35797919 15 43746394 43746404 11 + 0.482 0.697 0.966
ENSG00000167004 E002 6.3224780 2.145401e-03 0.412312988 0.69363534 15 43746405 43746407 3 + 0.904 0.817 -0.333
ENSG00000167004 E003 7.5485844 1.810709e-03 0.514546869 0.77108576 15 43746408 43746409 2 + 0.961 0.897 -0.240
ENSG00000167004 E004 10.7327492 1.288410e-03 0.739909639 0.89686991 15 43746410 43746422 13 + 1.082 1.054 -0.100
ENSG00000167004 E005 10.7327492 1.288410e-03 0.739909639 0.89686991 15 43746423 43746424 2 + 1.082 1.054 -0.100
ENSG00000167004 E006 13.8008600 2.655443e-03 0.985377893 0.99899506 15 43746425 43746427 3 + 1.170 1.170 -0.001
ENSG00000167004 E007 25.2270788 3.344926e-03 0.402451568 0.68559999 15 43746428 43746436 9 + 1.442 1.391 -0.178
ENSG00000167004 E008 25.4627859 2.447063e-03 0.332321798 0.62446123 15 43746437 43746437 1 + 1.449 1.391 -0.202
ENSG00000167004 E009 26.1965533 4.436508e-03 0.374496304 0.66212371 15 43746438 43746438 1 + 1.460 1.404 -0.190
ENSG00000167004 E010 27.6465073 2.718715e-03 0.278549242 0.57174893 15 43746439 43746441 3 + 1.486 1.422 -0.219
ENSG00000167004 E011 37.1442014 2.624087e-03 0.182655476 0.45914152 15 43746442 43746447 6 + 1.613 1.543 -0.239
ENSG00000167004 E012 41.2498747 2.631630e-03 0.085822020 0.30332404 15 43746448 43746448 1 + 1.665 1.578 -0.296
ENSG00000167004 E013 46.2002603 3.356654e-04 0.321230478 0.61427583 15 43746449 43746451 3 + 1.694 1.651 -0.146
ENSG00000167004 E014 46.3083853 3.198176e-04 0.254031580 0.54565850 15 43746452 43746452 1 + 1.698 1.648 -0.168
ENSG00000167004 E015 49.1783488 3.444322e-04 0.071272652 0.27051507 15 43746453 43746483 31 + 1.735 1.658 -0.261
ENSG00000167004 E016 41.6395524 1.581690e-03 0.133032253 0.38731236 15 43746484 43746570 87 + 1.663 1.590 -0.248
ENSG00000167004 E017 0.0000000       15 43746571 43746706 136 +      
ENSG00000167004 E018 0.3713386 1.805934e-01 0.535218542   15 43750201 43750446 246 + 0.089 0.185 1.229
ENSG00000167004 E019 0.3629044 1.650646e-02 0.684791848   15 43751189 43751505 317 + 0.162 0.102 -0.771
ENSG00000167004 E020 0.2454921 1.635624e-02 0.903711892   15 43751506 43751583 78 + 0.089 0.102 0.229
ENSG00000167004 E021 0.4896297 1.609351e-02 0.877110448   15 43751584 43751758 175 + 0.162 0.185 0.229
ENSG00000167004 E022 0.6346136 1.420798e-02 0.012983840 0.09528248 15 43752802 43752946 145 + 0.000 0.366 11.527
ENSG00000167004 E023 107.8041856 2.371934e-03 0.780220773 0.91526604 15 43753824 43753902 79 + 2.040 2.032 -0.030
ENSG00000167004 E024 0.2452102 1.637218e-02 0.903504912   15 43756628 43756648 21 + 0.089 0.102 0.229
ENSG00000167004 E025 279.2376213 6.702123e-05 0.053925949 0.23101751 15 43756649 43756766 118 + 2.463 2.429 -0.113
ENSG00000167004 E026 10.1463043 1.819871e-03 0.001971652 0.02528271 15 43756767 43759996 3230 + 0.891 1.170 1.023
ENSG00000167004 E027 248.8963734 8.638503e-04 0.244239201 0.53438470 15 43761424 43761531 108 + 2.409 2.384 -0.084
ENSG00000167004 E028 0.1186381 1.178390e-02 0.627829225   15 43761532 43762181 650 + 0.089 0.000 -9.859
ENSG00000167004 E029 202.8553862 5.835739e-04 0.263726312 0.55687945 15 43763077 43763151 75 + 2.321 2.296 -0.083
ENSG00000167004 E030 227.7862376 1.478918e-04 0.203686007 0.48630372 15 43763152 43763206 55 + 2.371 2.346 -0.083
ENSG00000167004 E031 0.0000000       15 43765435 43765449 15 +      
ENSG00000167004 E032 406.4067012 6.119716e-05 0.680631629 0.86816715 15 43765450 43765566 117 + 2.612 2.607 -0.017
ENSG00000167004 E033 0.4826165 4.577898e-01 0.638878173   15 43765567 43765886 320 + 0.225 0.102 -1.359
ENSG00000167004 E034 428.9528449 2.509098e-04 0.934550373 0.98108144 15 43765887 43766012 126 + 2.632 2.634 0.008
ENSG00000167004 E035 461.6025744 5.478523e-05 0.593743231 0.82112227 15 43766728 43766910 183 + 2.668 2.661 -0.021
ENSG00000167004 E036 2.0816045 6.694584e-02 0.638971776 0.84649007 15 43766911 43767522 612 + 0.448 0.529 0.399
ENSG00000167004 E037 554.9965455 5.704555e-05 0.175917217 0.44999668 15 43768489 43768597 109 + 2.752 2.736 -0.053
ENSG00000167004 E038 0.3631878 1.661303e-02 0.684638939   15 43768598 43769496 899 + 0.162 0.102 -0.771
ENSG00000167004 E039 0.0000000       15 43769497 43769517 21 +      
ENSG00000167004 E040 253.7392882 4.678190e-04 0.333240786 0.62526744 15 43769518 43769521 4 + 2.415 2.396 -0.063
ENSG00000167004 E041 490.4324153 4.952816e-05 0.674972389 0.86531118 15 43769522 43769646 125 + 2.688 2.695 0.023
ENSG00000167004 E042 0.4814789 1.573264e-02 0.400152721   15 43769647 43770249 603 + 0.225 0.102 -1.356
ENSG00000167004 E043 231.6686838 2.189664e-03 0.261641364 0.55432520 15 43770250 43770254 5 + 2.351 2.383 0.107
ENSG00000167004 E044 464.7115529 7.156899e-05 0.005604889 0.05382729 15 43770255 43770329 75 + 2.648 2.688 0.133
ENSG00000167004 E045 0.8695655 1.302918e-02 0.179815775 0.45505743 15 43770330 43770522 193 + 0.162 0.366 1.551
ENSG00000167004 E046 367.5753503 2.532455e-04 0.001769048 0.02322586 15 43770523 43770571 49 + 2.540 2.593 0.177
ENSG00000167004 E047 222.4311336 1.099443e-03 0.109510697 0.34733482 15 43770572 43770580 9 + 2.329 2.369 0.133
ENSG00000167004 E048 0.9797631 8.724005e-02 0.826258048 0.93706477 15 43770581 43771085 505 + 0.280 0.314 0.229
ENSG00000167004 E049 0.0000000       15 43771086 43771104 19 +      
ENSG00000167004 E050 1011.3106462 4.114563e-04 0.222864502 0.51031562 15 43771105 43773279 2175 + 2.998 3.013 0.050

Help

Please Click HERE to learn more details about the results from DEXseq.