ENSG00000167508

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000301012 ENSG00000167508 No_inf pgKDN_inf MVD protein_coding protein_coding 47.43168 30.9734 41.91663 0.6589433 1.848623 0.4363715 26.108940 16.2469420 29.535424 0.1697702 0.9019629 0.8618788 0.57223333 0.525325 0.706550 0.181225 0.02998465 0.02998465 FALSE TRUE
ENST00000562981 ENSG00000167508 No_inf pgKDN_inf MVD protein_coding retained_intron 47.43168 30.9734 41.91663 0.6589433 1.848623 0.4363715 2.952637 4.3350902 1.410946 0.5794100 0.9426400 -1.6125342 0.07334167 0.140875 0.032025 -0.108850 0.19967671 0.02998465   FALSE
ENST00000565842 ENSG00000167508 No_inf pgKDN_inf MVD protein_coding protein_coding_CDS_not_defined 47.43168 30.9734 41.91663 0.6589433 1.848623 0.4363715 3.195531 3.3236937 1.326588 1.1255808 0.4490044 -1.3185663 0.07024167 0.106325 0.030825 -0.075500 0.73232035 0.02998465   FALSE
MSTRG.11713.1 ENSG00000167508 No_inf pgKDN_inf MVD protein_coding   47.43168 30.9734 41.91663 0.6589433 1.848623 0.4363715 1.842608 0.5210386 3.200691 0.5210386 1.2149660 2.5959953 0.04187500 0.017500 0.080425 0.062925 0.42827464 0.02998465 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000167508 E001 0.6075454 0.0172839605 9.834494e-01 0.9986902635 16 88651934 88651934 1 - 0.201 0.207 0.047
ENSG00000167508 E002 0.7340524 0.0139821934 6.066963e-01 0.8288396477 16 88651935 88651939 5 - 0.201 0.282 0.632
ENSG00000167508 E003 40.7757766 0.0056319142 3.771851e-01 0.6641728965 16 88651940 88652353 414 - 1.593 1.643 0.171
ENSG00000167508 E004 28.9328370 0.0008795692 9.966583e-01 1.0000000000 16 88652354 88652509 156 - 1.467 1.472 0.016
ENSG00000167508 E005 24.2495800 0.0006521952 3.054699e-01 0.5987503804 16 88652510 88652605 96 - 1.418 1.361 -0.198
ENSG00000167508 E006 27.7100463 0.0005174635 9.980522e-01 1.0000000000 16 88653300 88653408 109 - 1.449 1.454 0.015
ENSG00000167508 E007 2.1306419 0.0072109584 3.315910e-04 0.0063082996 16 88653409 88653584 176 - 0.201 0.721 2.854
ENSG00000167508 E008 29.5493813 0.0004819264 9.656219e-02 0.3235509496 16 88654692 88654807 116 - 1.511 1.425 -0.298
ENSG00000167508 E009 0.4910456 0.0647224558 6.722979e-01   16 88654808 88654985 178 - 0.144 0.207 0.631
ENSG00000167508 E010 43.4405716 0.0004779218 4.275470e-01 0.7061065627 16 88655199 88655384 186 - 1.624 1.664 0.134
ENSG00000167508 E011 16.9458037 0.0010545096 2.883685e-01 0.5819594558 16 88655385 88655417 33 - 1.213 1.292 0.277
ENSG00000167508 E012 11.6717807 0.0036443558 8.192116e-01 0.9342025651 16 88655656 88655656 1 - 1.087 1.110 0.084
ENSG00000167508 E013 12.4073759 0.0031164765 7.277657e-01 0.8913192823 16 88655657 88655662 6 - 1.107 1.140 0.117
ENSG00000167508 E014 21.4066361 0.0006395612 8.747451e-02 0.3065600663 16 88655663 88655730 68 - 1.384 1.278 -0.368
ENSG00000167508 E015 1.2172679 0.0113211246 9.722951e-01 0.9947660217 16 88655834 88656104 271 - 0.338 0.346 0.047
ENSG00000167508 E016 16.5756825 0.0020556320 1.567721e-01 0.4231481491 16 88656105 88656120 16 - 1.276 1.177 -0.353
ENSG00000167508 E017 20.4775649 0.0047819423 3.046928e-01 0.5980696274 16 88656121 88656169 49 - 1.351 1.285 -0.230
ENSG00000167508 E018 23.7798898 0.0032202948 6.268003e-01 0.8397193860 16 88656170 88656260 91 - 1.398 1.372 -0.090
ENSG00000167508 E019 14.3996480 0.0010372756 2.566655e-01 0.5487603494 16 88656261 88656304 44 - 1.213 1.130 -0.296
ENSG00000167508 E020 2.7314180 0.0053357630 7.189398e-03 0.0642081478 16 88656305 88656561 257 - 0.376 0.746 1.731
ENSG00000167508 E021 1.9940963 0.0196511305 5.294331e-03 0.0517009637 16 88656562 88656794 233 - 0.252 0.668 2.217
ENSG00000167508 E022 0.7520906 0.1743522981 5.374685e-02 0.2307029681 16 88656795 88656857 63 - 0.078 0.402 2.954
ENSG00000167508 E023 1.6154791 0.0089537265 3.251369e-02 0.1708644566 16 88656858 88657145 288 - 0.252 0.573 1.802
ENSG00000167508 E024 1.0830456 0.0133421507 2.759422e-01 0.5693405300 16 88657146 88657247 102 - 0.376 0.207 -1.176
ENSG00000167508 E025 0.1176306 0.0117602794 8.448373e-01   16 88657248 88657266 19 - 0.078 0.000 -9.816
ENSG00000167508 E026 26.7406861 0.0007008632 8.486210e-02 0.3010360854 16 88657436 88657582 147 - 1.473 1.377 -0.329
ENSG00000167508 E027 2.4449526 0.0335469526 6.423523e-01 0.8483167581 16 88657583 88657734 152 - 0.500 0.573 0.342
ENSG00000167508 E028 2.9538782 0.0055380498 6.613373e-02 0.2589886772 16 88657735 88657914 180 - 0.472 0.721 1.117
ENSG00000167508 E029 12.4010071 0.0344561837 9.283333e-01 0.9787529615 16 88657915 88657943 29 - 1.114 1.130 0.059
ENSG00000167508 E030 21.1713867 0.0007447784 7.965985e-02 0.2896106602 16 88657944 88658029 86 - 1.380 1.271 -0.381
ENSG00000167508 E031 14.5310211 0.0011211730 2.286792e-01 0.5174133885 16 88658650 88658720 71 - 1.218 1.130 -0.315
ENSG00000167508 E032 0.1268540 0.0123399783 3.448280e-01   16 88658721 88658783 63 - 0.000 0.115 10.861
ENSG00000167508 E033 1.8968194 0.0278278556 2.355725e-05 0.0007090049 16 88658973 88659328 356 - 0.078 0.721 4.439
ENSG00000167508 E034 2.9038000 0.0049736921 5.371197e-01 0.7861570726 16 88660520 88660637 118 - 0.618 0.536 -0.368
ENSG00000167508 E035 0.6158232 0.6623420868 6.324103e-01 0.8425575811 16 88660638 88660747 110 - 0.144 0.282 1.217
ENSG00000167508 E036 2.2021951 0.0111163109 3.769278e-01 0.6640716349 16 88660748 88660838 91 - 0.442 0.573 0.632
ENSG00000167508 E037 0.7529694 0.0483191292 3.287942e-02 0.1719998893 16 88660839 88660841 3 - 0.078 0.402 2.953
ENSG00000167508 E038 1.8688061 0.0137988283 9.175312e-03 0.0759666942 16 88660842 88661105 264 - 0.252 0.639 2.091
ENSG00000167508 E039 0.1268540 0.0123399783 3.448280e-01   16 88662102 88662114 13 - 0.000 0.115 10.861
ENSG00000167508 E040 0.4996084 0.0336194308 1.591288e-01   16 88662115 88662167 53 - 0.078 0.282 2.217
ENSG00000167508 E041 1.7437800 0.0275940182 2.022228e-02 0.1278776594 16 88662712 88662781 70 - 0.252 0.607 1.953
ENSG00000167508 E042 2.3500407 0.0108688065 4.139085e-02 0.1975726935 16 88662782 88662907 126 - 0.376 0.668 1.409
ENSG00000167508 E043 11.0643630 0.0132254840 8.710228e-01 0.9556285577 16 88663011 88663161 151 - 1.080 1.067 -0.047

Help

Please Click HERE to learn more details about the results from DEXseq.