ENSG00000167645

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000337679 ENSG00000167645 No_inf pgKDN_inf YIF1B protein_coding protein_coding 38.63925 31.99745 41.13446 1.547495 1.572344 0.3622903 1.419493 2.570231 0.4707769 0.7250014 0.273474 -2.4240607 0.04054167 0.081225 0.011950 -0.069275 0.11561603 0.02902834 FALSE  
ENST00000392124 ENSG00000167645 No_inf pgKDN_inf YIF1B protein_coding protein_coding 38.63925 31.99745 41.13446 1.547495 1.572344 0.3622903 1.005971 2.760234 0.0000000 1.1557944 0.000000 -8.1138639 0.03159167 0.088450 0.000000 -0.088450 0.02902834 0.02902834 FALSE  
ENST00000587039 ENSG00000167645 No_inf pgKDN_inf YIF1B protein_coding protein_coding 38.63925 31.99745 41.13446 1.547495 1.572344 0.3622903 1.461446 0.439676 2.9266302 0.4396760 1.773171 2.7072037 0.03506667 0.012325 0.067900 0.055575 0.80982971 0.02902834 FALSE  
ENST00000592694 ENSG00000167645 No_inf pgKDN_inf YIF1B protein_coding protein_coding 38.63925 31.99745 41.13446 1.547495 1.572344 0.3622903 27.127247 17.580002 32.0940214 3.6034619 1.750734 0.8679984 0.69170833 0.552925 0.781725 0.228800 0.31021284 0.02902834 FALSE  
MSTRG.15115.4 ENSG00000167645 No_inf pgKDN_inf YIF1B protein_coding   38.63925 31.99745 41.13446 1.547495 1.572344 0.3622903 1.987593 3.343991 0.0000000 1.9937984 0.000000 -8.3897350 0.05475000 0.099325 0.000000 -0.099325 0.44126155 0.02902834 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000167645 E001 0.1271363 0.0123076283 0.5445654086   19 38303558 38305103 1546 - 0.000 0.095 10.243
ENSG00000167645 E002 0.0000000       19 38305104 38305113 10 -      
ENSG00000167645 E003 0.3621491 0.0166295410 0.5762452354   19 38305114 38305114 1 - 0.173 0.095 -0.994
ENSG00000167645 E004 0.3621491 0.0166295410 0.5762452354   19 38305115 38305115 1 - 0.173 0.095 -0.994
ENSG00000167645 E005 7.5281958 0.0032412807 0.1097829628 0.347743837 19 38305116 38305197 82 - 0.836 1.003 0.631
ENSG00000167645 E006 34.2624724 0.0005122997 0.5437356049 0.790539037 19 38305198 38305351 154 - 1.558 1.536 -0.076
ENSG00000167645 E007 15.1658061 0.0010513627 0.5403574558 0.788422631 19 38305352 38305361 10 - 1.227 1.190 -0.133
ENSG00000167645 E008 38.3978799 0.0025174141 0.6078844119 0.829175306 19 38305362 38305507 146 - 1.578 1.610 0.108
ENSG00000167645 E009 0.1268540 0.0125242006 0.5442297177   19 38306697 38306761 65 - 0.000 0.095 11.669
ENSG00000167645 E010 1.2695710 0.0099601173 0.0005173221 0.008974349 19 38306762 38306913 152 - 0.000 0.538 14.871
ENSG00000167645 E011 3.2527124 0.0046240109 0.0014133051 0.019544922 19 38306914 38306990 77 - 0.347 0.789 2.077
ENSG00000167645 E012 0.2533610 0.0161185299 0.2463500043   19 38306991 38307427 437 - 0.000 0.173 12.646
ENSG00000167645 E013 19.7527177 0.0007475314 0.6310904912 0.841797362 19 38307428 38307470 43 - 1.297 1.335 0.132
ENSG00000167645 E014 16.8768270 0.0037247400 0.6872245923 0.870967017 19 38307471 38307521 51 - 1.263 1.241 -0.077
ENSG00000167645 E015 0.8606542 0.0140987931 0.7214164156 0.887843943 19 38307522 38307596 75 - 0.239 0.297 0.422
ENSG00000167645 E016 30.6467819 0.0009128430 0.1436388160 0.403567347 19 38307597 38307752 156 - 1.534 1.466 -0.236
ENSG00000167645 E017 19.3817543 0.0030961592 0.7046114474 0.879911871 19 38308792 38308810 19 - 1.291 1.325 0.116
ENSG00000167645 E018 22.1818926 0.0021244779 0.9000208831 0.967525589 19 38308811 38308849 39 - 1.357 1.372 0.054
ENSG00000167645 E019 0.1170040 0.0117697538 0.5319631214   19 38308850 38308978 129 - 0.095 0.000 -11.854
ENSG00000167645 E020 25.4278902 0.0005728698 0.2623257503 0.555165794 19 38308979 38309057 79 - 1.384 1.454 0.244
ENSG00000167645 E021 0.2458395 0.0163470917 0.9921977575   19 38309058 38309223 166 - 0.095 0.095 0.006
ENSG00000167645 E022 27.2239818 0.0272590305 0.8354884392 0.940853415 19 38309224 38309328 105 - 1.437 1.462 0.084
ENSG00000167645 E023 0.6339843 0.0157822823 0.0211326483 0.131476324 19 38309329 38309404 76 - 0.000 0.348 13.920
ENSG00000167645 E024 46.1736764 0.0019212512 0.0043992835 0.045346264 19 38309405 38309643 239 - 1.730 1.613 -0.400
ENSG00000167645 E025 1.6388034 0.1358518100 0.0060802496 0.057041604 19 38309644 38309923 280 - 0.095 0.596 3.591
ENSG00000167645 E026 2.3831204 0.0059133031 0.0021338055 0.026826263 19 38315425 38315716 292 - 0.239 0.692 2.421
ENSG00000167645 E027 1.2256970 0.0608777597 0.9901578496 1.000000000 19 38315717 38315722 6 - 0.347 0.348 0.006
ENSG00000167645 E028 2.1132600 0.0162964089 0.0997660144 0.329987748 19 38315723 38315746 24 - 0.347 0.596 1.269
ENSG00000167645 E029 2.1018655 0.0591503649 0.2979492941 0.590949069 19 38315747 38315859 113 - 0.392 0.568 0.881
ENSG00000167645 E030 1.8355416 0.0688291770 0.8172929018 0.933608789 19 38315860 38315868 9 - 0.471 0.434 -0.187
ENSG00000167645 E031 11.0518368 0.0013699199 0.0229591675 0.138201897 19 38315869 38315947 79 - 1.167 0.982 -0.672
ENSG00000167645 E032 0.3627784 0.0166116148 0.5761316626   19 38317152 38317273 122 - 0.173 0.095 -0.994

Help

Please Click HERE to learn more details about the results from DEXseq.