ENSG00000167962

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000561787 ENSG00000167962 No_inf pgKDN_inf ZNF598 protein_coding retained_intron 34.08805 32.66642 34.18384 1.003537 3.422596 0.06548649 2.173658 3.912109 0.0000000 0.7266589 0.0000000 -8.6154858 0.06213333 0.119375 0.000000 -0.119375 6.918451e-07 6.918451e-07 TRUE FALSE
ENST00000562988 ENSG00000167962 No_inf pgKDN_inf ZNF598 protein_coding retained_intron 34.08805 32.66642 34.18384 1.003537 3.422596 0.06548649 1.254332 2.045727 0.1517452 0.9466600 0.1517452 -3.6678542 0.03667500 0.064600 0.004050 -0.060550 3.327494e-01 6.918451e-07 FALSE TRUE
ENST00000567008 ENSG00000167962 No_inf pgKDN_inf ZNF598 protein_coding retained_intron 34.08805 32.66642 34.18384 1.003537 3.422596 0.06548649 6.829325 7.493137 8.3326880 0.9663885 3.4486977 0.1530184 0.18987500 0.227500 0.219025 -0.008475 9.117122e-01 6.918451e-07 FALSE FALSE
ENST00000652647 ENSG00000167962 No_inf pgKDN_inf ZNF598 protein_coding protein_coding_CDS_not_defined 34.08805 32.66642 34.18384 1.003537 3.422596 0.06548649 15.445143 12.848430 17.0389539 1.3003603 2.2540281 0.4069687 0.46005000 0.391850 0.525600 0.133750 7.822620e-01 6.918451e-07 FALSE TRUE
MSTRG.10434.3 ENSG00000167962 No_inf pgKDN_inf ZNF598 protein_coding   34.08805 32.66642 34.18384 1.003537 3.422596 0.06548649 2.483884 0.000000 3.7445336 0.0000000 2.4181711 8.5524899 0.07446667 0.000000 0.109750 0.109750 4.739135e-01 6.918451e-07 FALSE TRUE
MSTRG.10434.6 ENSG00000167962 No_inf pgKDN_inf ZNF598 protein_coding   34.08805 32.66642 34.18384 1.003537 3.422596 0.06548649 2.742543 3.558263 2.5364071 0.6627172 0.5897477 -0.4867589 0.08182500 0.110550 0.072525 -0.038025 8.274675e-01 6.918451e-07 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000167962 E001 0.0000000       16 1997654 1997654 1 -      
ENSG00000167962 E002 0.0000000       16 1997655 1997662 8 -      
ENSG00000167962 E003 15.5137158 0.0008682880 1.140577e-01 0.3556084448 16 1997663 1998152 490 - 1.154 1.269 0.408
ENSG00000167962 E004 8.4785357 0.0018752144 4.151078e-01 0.6952364240 16 1998153 1998423 271 - 0.935 1.012 0.287
ENSG00000167962 E005 23.1362292 0.0006295144 9.109416e-01 0.9717869788 16 1998424 1998499 76 - 1.386 1.379 -0.022
ENSG00000167962 E006 16.4850864 0.0011293680 3.277474e-01 0.6203013876 16 1998500 1998516 17 - 1.277 1.208 -0.243
ENSG00000167962 E007 22.3595367 0.0006629875 3.137782e-01 0.6069219401 16 1998517 1998585 69 - 1.399 1.338 -0.213
ENSG00000167962 E008 3.4251810 0.0336978232 9.931677e-01 1.0000000000 16 1998586 1998701 116 - 0.647 0.645 -0.007
ENSG00000167962 E009 27.5090301 0.0011300635 3.649577e-01 0.6533768549 16 1998702 1998852 151 - 1.480 1.429 -0.174
ENSG00000167962 E010 0.5079806 0.0435048258 4.885945e-02 0.2177659413 16 1998853 1998964 112 - 0.000 0.296 10.295
ENSG00000167962 E011 21.1230521 0.0242453425 6.762907e-01 0.8658391127 16 1998965 1999121 157 - 1.325 1.361 0.127
ENSG00000167962 E012 0.9980187 0.0115556680 1.542100e-01 0.4195077795 16 1999122 1999195 74 - 0.173 0.392 1.578
ENSG00000167962 E013 4.9825117 0.0665345569 1.898805e-01 0.4687608076 16 1999496 1999499 4 - 0.868 0.669 -0.802
ENSG00000167962 E014 46.1437763 0.0003142266 6.149861e-02 0.2491261845 16 1999500 1999893 394 - 1.712 1.633 -0.267
ENSG00000167962 E015 21.9850915 0.0012249071 4.343725e-01 0.7116910186 16 1999894 2000009 116 - 1.386 1.338 -0.168
ENSG00000167962 E016 42.8038604 0.0004174514 3.770342e-01 0.6641423934 16 2000010 2000256 247 - 1.620 1.660 0.133
ENSG00000167962 E017 2.4678246 0.0133148214 3.902782e-01 0.6758473718 16 2000257 2000390 134 - 0.472 0.594 0.578
ENSG00000167962 E018 8.6036974 0.0017483414 3.533936e-01 0.6431307890 16 2000391 2000408 18 - 0.935 1.022 0.324
ENSG00000167962 E019 20.7985825 0.0224224163 7.990828e-01 0.9245860910 16 2000409 2000481 73 - 1.349 1.328 -0.075
ENSG00000167962 E020 40.7106072 0.0055223577 5.858017e-01 0.8161557453 16 2001004 2001191 188 - 1.605 1.633 0.097
ENSG00000167962 E021 10.3679333 0.0206197883 4.139511e-01 0.6943861831 16 2001583 2001591 9 - 1.098 1.012 -0.314
ENSG00000167962 E022 24.7237934 0.0101802629 1.409287e-01 0.3993518176 16 2001592 2001700 109 - 1.354 1.456 0.354
ENSG00000167962 E023 7.1289832 0.0019785517 8.060926e-06 0.0002835995 16 2001701 2002085 385 - 0.596 1.079 1.900
ENSG00000167962 E024 31.9898117 0.0195364094 4.144429e-01 0.6946262038 16 2002206 2002423 218 - 1.551 1.485 -0.228
ENSG00000167962 E025 1.4863606 0.1965695763 4.013587e-01 0.6845296250 16 2002424 2002520 97 - 0.297 0.470 0.995
ENSG00000167962 E026 30.6421037 0.0008097373 1.310362e-01 0.3840093191 16 2002521 2002732 212 - 1.539 1.460 -0.272
ENSG00000167962 E027 3.7467491 0.0039141688 3.135601e-03 0.0356633264 16 2002733 2002990 258 - 0.434 0.821 1.709
ENSG00000167962 E028 19.0194353 0.0012020023 5.976198e-01 0.8233762728 16 2002991 2003120 130 - 1.282 1.318 0.123
ENSG00000167962 E029 1.1335583 0.0106154302 1.425657e-02 0.1014799990 16 2003121 2003615 495 - 0.095 0.470 2.993
ENSG00000167962 E030 16.4659650 0.0195647230 4.988706e-01 0.7592396102 16 2003616 2003728 113 - 1.210 1.269 0.208
ENSG00000167962 E031 0.7527788 0.0142185342 9.442496e-02 0.3197736981 16 2004035 2004182 148 - 0.095 0.346 2.315
ENSG00000167962 E032 14.5739794 0.0161075899 2.700924e-02 0.1527027200 16 2009524 2009821 298 - 1.282 1.087 -0.693

Help

Please Click HERE to learn more details about the results from DEXseq.