ENSG00000167967

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000301727 ENSG00000167967 No_inf pgKDN_inf E4F1 protein_coding protein_coding 18.21802 18.39651 15.0274 1.73557 1.499297 -0.2916614 9.7608059 11.1457746 8.5696587 1.29460469 1.4340338 -0.3787985 0.55671667 0.627800 0.562975 -0.064825 0.84974706 0.03151303 FALSE TRUE
ENST00000563643 ENSG00000167967 No_inf pgKDN_inf E4F1 protein_coding retained_intron 18.21802 18.39651 15.0274 1.73557 1.499297 -0.2916614 0.7785118 1.0358028 0.0000000 0.64946667 0.0000000 -6.7084671 0.03494167 0.051950 0.000000 -0.051950 0.52862829 0.03151303 FALSE FALSE
ENST00000565090 ENSG00000167967 No_inf pgKDN_inf E4F1 protein_coding protein_coding 18.21802 18.39651 15.0274 1.73557 1.499297 -0.2916614 2.7860350 0.6564509 3.8776643 0.65645095 0.6482727 2.5443330 0.15384167 0.029725 0.262175 0.232450 0.03151303 0.03151303 FALSE TRUE
ENST00000567111 ENSG00000167967 No_inf pgKDN_inf E4F1 protein_coding retained_intron 18.21802 18.39651 15.0274 1.73557 1.499297 -0.2916614 1.1252396 2.4192912 0.4258746 1.40741767 0.4258746 -2.4785506 0.05745000 0.113950 0.030725 -0.083225 0.81174351 0.03151303 FALSE TRUE
ENST00000569796 ENSG00000167967 No_inf pgKDN_inf E4F1 protein_coding retained_intron 18.21802 18.39651 15.0274 1.73557 1.499297 -0.2916614 1.2494215 1.6385794 0.6187717 0.07721526 0.1077667 -1.3906152 0.06857500 0.091250 0.042775 -0.048475 0.63416808 0.03151303 FALSE TRUE
MSTRG.10448.4 ENSG00000167967 No_inf pgKDN_inf E4F1 protein_coding   18.21802 18.39651 15.0274 1.73557 1.499297 -0.2916614 0.9013094 1.3622033 0.9668417 0.40942019 0.9668417 -0.4902975 0.05522500 0.079025 0.069725 -0.009300 0.54170412 0.03151303 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000167967 E001 0.3611417 0.0168600974 0.3816169173   16 2223580 2223590 11 + 0.200 0.081 -1.508
ENSG00000167967 E002 0.4882780 0.0162509462 0.7175982943   16 2223591 2223593 3 + 0.200 0.149 -0.508
ENSG00000167967 E003 0.8603073 0.0165789236 0.9208332867 0.975246538 16 2223594 2223614 21 + 0.273 0.260 -0.093
ENSG00000167967 E004 4.9854975 0.0322894772 0.0454133609 0.208443989 16 2223615 2223715 101 + 0.903 0.652 -1.005
ENSG00000167967 E005 4.8793586 0.0033085026 0.0765321706 0.282887363 16 2223716 2223770 55 + 0.870 0.672 -0.798
ENSG00000167967 E006 0.3628408 0.0163997213 0.3825729463   16 2223771 2223929 159 + 0.200 0.081 -1.508
ENSG00000167967 E007 0.4873690 0.1210945342 0.7344578346   16 2228292 2228371 80 + 0.200 0.149 -0.508
ENSG00000167967 E008 3.8121432 0.0038545011 0.6444644191 0.849468302 16 2228372 2228392 21 + 0.706 0.652 -0.228
ENSG00000167967 E009 6.7743799 0.0050538919 0.7045406247 0.879884547 16 2228393 2228523 131 + 0.903 0.867 -0.139
ENSG00000167967 E010 6.8870638 0.0022698256 0.5793500145 0.812106270 16 2229570 2229675 106 + 0.919 0.867 -0.198
ENSG00000167967 E011 3.1559778 0.0102457761 0.0002633915 0.005232322 16 2229676 2230035 360 + 0.200 0.757 3.016
ENSG00000167967 E012 0.9899965 0.0118362582 0.8416872465 0.943205966 16 2230036 2230079 44 + 0.273 0.307 0.229
ENSG00000167967 E013 15.6726273 0.0084645683 0.0075837559 0.066616008 16 2230080 2232170 2091 + 1.061 1.289 0.814
ENSG00000167967 E014 15.4214689 0.0009838942 0.8208506834 0.935014504 16 2232171 2232364 194 + 1.193 1.215 0.077
ENSG00000167967 E015 16.2721622 0.0011039276 0.9888139358 1.000000000 16 2232456 2232576 121 + 1.224 1.231 0.022
ENSG00000167967 E016 19.3999728 0.0007405777 0.1305423432 0.383272965 16 2232756 2232908 153 + 1.354 1.261 -0.325
ENSG00000167967 E017 0.3795211 0.5685863377 0.4463638691   16 2233006 2233010 5 + 0.000 0.208 10.568
ENSG00000167967 E018 16.5562858 0.0009085338 0.0609272352 0.247798017 16 2233011 2233183 173 + 1.307 1.181 -0.444
ENSG00000167967 E019 3.7435340 0.0519861023 0.0888404709 0.309250159 16 2233184 2233437 254 + 0.483 0.757 1.208
ENSG00000167967 E020 7.4996582 0.0022022792 0.4406328576 0.716347881 16 2233438 2233500 63 + 0.963 0.891 -0.271
ENSG00000167967 E021 14.5838680 0.0011940428 0.5221464714 0.775776089 16 2233501 2233647 147 + 1.150 1.204 0.190
ENSG00000167967 E022 0.6179297 0.0158495529 0.9663146046 0.993124964 16 2233648 2233718 71 + 0.200 0.208 0.077
ENSG00000167967 E023 0.8797889 0.0124574231 0.1301863503 0.382808342 16 2233719 2233881 163 + 0.111 0.349 2.077
ENSG00000167967 E024 3.1014635 0.0236465332 0.3970044217 0.681391181 16 2233882 2233884 3 + 0.523 0.652 0.579
ENSG00000167967 E025 10.0598513 0.0025002466 0.0618602803 0.249872034 16 2233885 2233990 106 + 0.919 1.097 0.655
ENSG00000167967 E026 0.1265070 0.0123605912 0.7844479879   16 2233991 2234170 180 + 0.000 0.081 9.793
ENSG00000167967 E027 17.8723746 0.0101289917 0.9447309532 0.984696478 16 2234171 2234388 218 + 1.268 1.266 -0.006
ENSG00000167967 E028 1.6162719 0.0749180916 0.4984398123 0.758930971 16 2234389 2234582 194 + 0.336 0.454 0.662
ENSG00000167967 E029 6.9288962 0.0027773074 0.4204797415 0.699798115 16 2234583 2234599 17 + 0.835 0.924 0.340
ENSG00000167967 E030 8.3049033 0.0034825189 0.1737837134 0.447242010 16 2234600 2234639 40 + 0.870 1.010 0.524
ENSG00000167967 E031 14.9284541 0.0050305431 0.7621623049 0.907258548 16 2234640 2234781 142 + 1.176 1.204 0.097
ENSG00000167967 E032 0.6258335 0.0149033760 0.3315246720 0.623639980 16 2234782 2234858 77 + 0.111 0.260 1.492
ENSG00000167967 E033 14.8329109 0.0011140594 0.5442248871 0.790758771 16 2234859 2234949 91 + 1.159 1.209 0.178
ENSG00000167967 E034 12.4605997 0.0012945411 0.9328676815 0.980593766 16 2234950 2235001 52 + 1.113 1.124 0.041
ENSG00000167967 E035 2.3708139 0.2317545466 0.2442451351 0.534384695 16 2235002 2235080 79 + 0.336 0.610 1.399
ENSG00000167967 E036 16.9817746 0.0010812941 0.5504929135 0.794845761 16 2235081 2235143 63 + 1.267 1.231 -0.130
ENSG00000167967 E037 0.5074773 0.0157065402 0.1006106068 0.331190914 16 2235144 2235215 72 + 0.000 0.260 11.610
ENSG00000167967 E038 48.8601856 0.0004480923 0.0129204996 0.094926335 16 2235216 2235742 527 + 1.743 1.648 -0.319

Help

Please Click HERE to learn more details about the results from DEXseq.