ENSG00000167996

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000273550 ENSG00000167996 No_inf pgKDN_inf FTH1 protein_coding protein_coding 7298.793 3022.504 8145.572 27.30019 41.41797 1.430269 409.0409 161.6181 501.4893 4.554408 11.61736 1.633569 0.0558750 0.053500 0.061550 0.008050 0.4004954942 0.0002986192 FALSE  
ENST00000526640 ENSG00000167996 No_inf pgKDN_inf FTH1 protein_coding protein_coding 7298.793 3022.504 8145.572 27.30019 41.41797 1.430269 1885.2237 757.0441 2182.1314 8.724165 37.18636 1.527276 0.2571667 0.250475 0.267875 0.017400 0.3532160903 0.0002986192 FALSE  
ENST00000530019 ENSG00000167996 No_inf pgKDN_inf FTH1 protein_coding protein_coding 7298.793 3022.504 8145.572 27.30019 41.41797 1.430269 1925.9184 698.1459 2096.2089 28.288444 62.66648 1.586168 0.2553583 0.230775 0.257300 0.026525 0.3114257068 0.0002986192 FALSE  
ENST00000620041 ENSG00000167996 No_inf pgKDN_inf FTH1 protein_coding protein_coding 7298.793 3022.504 8145.572 27.30019 41.41797 1.430269 2696.7873 1267.4689 2973.9789 12.456450 39.70670 1.230437 0.3811833 0.419425 0.365225 -0.054200 0.0002986192 0.0002986192 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000167996 E001 0.3808443 2.735864e-02 1.429828e-02   11 61959718 61959821 104 - 0.000 0.336 11.798
ENSG00000167996 E002 0.3808443 2.735864e-02 1.429828e-02   11 61959822 61959904 83 - 0.000 0.336 13.345
ENSG00000167996 E003 0.0000000       11 61959905 61959927 23 -      
ENSG00000167996 E004 0.0000000       11 61964285 61964565 281 -      
ENSG00000167996 E005 0.0000000       11 61964566 61964584 19 -      
ENSG00000167996 E006 0.0000000       11 61964585 61964600 16 -      
ENSG00000167996 E007 0.0000000       11 61964601 61964746 146 -      
ENSG00000167996 E008 0.0000000       11 61964747 61964837 91 -      
ENSG00000167996 E009 0.0000000       11 61964838 61964891 54 -      
ENSG00000167996 E010 0.0000000       11 61964892 61964986 95 -      
ENSG00000167996 E011 0.0000000       11 61964987 61964988 2 -      
ENSG00000167996 E012 0.0000000       11 61964989 61965105 117 -      
ENSG00000167996 E013 0.0000000       11 61965106 61965112 7 -      
ENSG00000167996 E014 0.0000000       11 61965113 61965368 256 -      
ENSG00000167996 E015 0.0000000       11 61965369 61965515 147 -      
ENSG00000167996 E016 14.2122487 1.051208e-03 7.611115e-01 0.906698201 11 61965516 61965577 62 - 1.154 1.128 -0.091
ENSG00000167996 E017 11.3806370 1.475455e-03 6.078614e-05 0.001558933 11 61966989 61967311 323 - 0.924 1.267 1.242
ENSG00000167996 E018 555.6142456 2.266095e-04 3.689757e-01 0.657427623 11 61967312 61967371 60 - 2.703 2.717 0.045
ENSG00000167996 E019 882.9620755 6.267185e-05 9.549362e-02 0.321756288 11 61967372 61967401 30 - 2.903 2.921 0.061
ENSG00000167996 E020 1213.8155394 3.444925e-05 8.295356e-01 0.938244459 11 61967402 61967453 52 - 3.047 3.045 -0.006
ENSG00000167996 E021 878.8842071 3.150035e-05 5.408757e-01 0.788686568 11 61967454 61967457 4 - 2.908 2.902 -0.021
ENSG00000167996 E022 2138.9005659 2.700495e-05 1.575271e-01 0.424135572 11 61967458 61967547 90 - 3.295 3.286 -0.029
ENSG00000167996 E023 1186.6765918 4.884289e-04 8.795738e-01 0.959352575 11 61967548 61967634 87 - 3.037 3.035 -0.006

Help

Please Click HERE to learn more details about the results from DEXseq.