ENSG00000168259

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000457167 ENSG00000168259 No_inf pgKDN_inf DNAJC7 protein_coding protein_coding 94.31173 93.28182 103.817 4.064538 2.219306 0.1543596 27.145393 14.15253 34.48160 2.327973 2.114760 1.2841660 0.29022500 0.155525 0.332025 0.176500 0.02362263 0.01076802 FALSE TRUE
ENST00000587727 ENSG00000168259 No_inf pgKDN_inf DNAJC7 protein_coding protein_coding 94.31173 93.28182 103.817 4.064538 2.219306 0.1543596 5.478318 10.23926 6.19569 3.462705 3.614380 -0.7238565 0.05463333 0.106175 0.057725 -0.048450 0.82900515 0.01076802   FALSE
ENST00000674214 ENSG00000168259 No_inf pgKDN_inf DNAJC7 protein_coding protein_coding 94.31173 93.28182 103.817 4.064538 2.219306 0.1543596 46.908493 47.61314 52.85672 2.157417 4.342737 0.1506970 0.49668333 0.511175 0.510650 -0.000525 1.00000000 0.01076802 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000168259 E001 0.0000000       17 41976421 41976434 14 -      
ENSG00000168259 E002 0.0000000       17 41976435 41976456 22 -      
ENSG00000168259 E003 0.0000000       17 41976457 41976472 16 -      
ENSG00000168259 E004 0.0000000       17 41976473 41976478 6 -      
ENSG00000168259 E005 0.0000000       17 41976479 41976479 1 -      
ENSG00000168259 E006 0.0000000       17 41976480 41976492 13 -      
ENSG00000168259 E007 0.0000000       17 41976493 41976494 2 -      
ENSG00000168259 E008 0.0000000       17 41976495 41976500 6 -      
ENSG00000168259 E009 0.0000000       17 41976501 41976522 22 -      
ENSG00000168259 E010 0.0000000       17 41976523 41976526 4 -      
ENSG00000168259 E011 0.0000000       17 41976527 41976527 1 -      
ENSG00000168259 E012 0.0000000       17 41976528 41976528 1 -      
ENSG00000168259 E013 0.0000000       17 41976529 41976530 2 -      
ENSG00000168259 E014 0.0000000       17 41976531 41976534 4 -      
ENSG00000168259 E015 0.0000000       17 41976535 41976537 3 -      
ENSG00000168259 E016 0.0000000       17 41976538 41976540 3 -      
ENSG00000168259 E017 0.0000000       17 41976541 41976544 4 -      
ENSG00000168259 E018 0.0000000       17 41976545 41976564 20 -      
ENSG00000168259 E019 0.0000000       17 41976565 41976572 8 -      
ENSG00000168259 E020 0.0000000       17 41976573 41976580 8 -      
ENSG00000168259 E021 0.0000000       17 41976581 41976677 97 -      
ENSG00000168259 E022 0.0000000       17 41976678 41976739 62 -      
ENSG00000168259 E023 0.0000000       17 41976740 41976770 31 -      
ENSG00000168259 E024 0.0000000       17 41976777 41976800 24 -      
ENSG00000168259 E025 0.0000000       17 41977261 41977323 63 -      
ENSG00000168259 E026 0.8783121 0.1902864564 9.016758e-02 3.119570e-01 17 41981479 41981854 376 - 0.093 0.398 2.652
ENSG00000168259 E027 91.8014576 0.0003407973 4.654860e-02 2.117359e-01 17 41981855 41982007 153 - 1.932 2.000 0.229
ENSG00000168259 E028 0.1268540 0.0123479142 5.213128e-01   17 41982246 41982249 4 - 0.000 0.097 11.507
ENSG00000168259 E029 0.1268540 0.0123479142 5.213128e-01   17 41982250 41982254 5 - 0.000 0.097 11.507
ENSG00000168259 E030 122.9389059 0.0001552714 3.649608e-02 1.838023e-01 17 41982255 41982401 147 - 2.061 2.122 0.205
ENSG00000168259 E031 1.2706733 0.0101751271 4.162166e-04 7.560872e-03 17 41982402 41982601 200 - 0.000 0.545 14.716
ENSG00000168259 E032 66.7535129 0.0002393009 6.137590e-01 8.320808e-01 17 41983563 41983617 55 - 1.818 1.843 0.083
ENSG00000168259 E033 45.9992345 0.0003300660 8.346904e-01 9.404456e-01 17 41983618 41983636 19 - 1.674 1.671 -0.010
ENSG00000168259 E034 39.7192396 0.0013742474 1.208901e-30 7.494351e-28 17 41983637 41986067 2431 - 1.179 1.817 2.196
ENSG00000168259 E035 0.7343044 0.0142207783 9.699297e-01 9.938644e-01 17 41986561 41986565 5 - 0.235 0.243 0.067
ENSG00000168259 E036 0.7343044 0.0142207783 9.699297e-01 9.938644e-01 17 41986566 41986572 7 - 0.235 0.243 0.067
ENSG00000168259 E037 0.7343044 0.0142207783 9.699297e-01 9.938644e-01 17 41986573 41986591 19 - 0.235 0.243 0.067
ENSG00000168259 E038 13.6374284 0.0550627936 9.277232e-06 3.203318e-04 17 41986592 41987594 1003 - 0.797 1.358 2.050
ENSG00000168259 E039 3.6064270 0.0040181712 1.204530e-02 9.074608e-02 17 41987595 41987676 82 - 0.464 0.797 1.459
ENSG00000168259 E040 2.4894577 0.0655375721 3.723395e-02 1.857812e-01 17 41987677 41987694 18 - 0.341 0.677 1.652
ENSG00000168259 E041 2.3367586 0.0175110425 4.648774e-01 7.342431e-01 17 41987695 41987818 124 - 0.464 0.575 0.526
ENSG00000168259 E042 79.5739757 0.0002010464 3.206604e-02 1.693381e-01 17 41987819 41987905 87 - 1.938 1.873 -0.217
ENSG00000168259 E043 40.5322681 0.0004083523 1.412759e-01 3.998123e-01 17 41987906 41987910 5 - 1.649 1.586 -0.212
ENSG00000168259 E044 6.1016642 0.0042252758 7.041158e-04 1.140071e-02 17 41987911 41988731 821 - 0.614 1.001 1.536
ENSG00000168259 E045 68.8494341 0.0002446375 5.433139e-02 2.321221e-01 17 41988732 41988786 55 - 1.874 1.812 -0.210
ENSG00000168259 E046 38.4282971 0.0003931755 9.004605e-02 3.116565e-01 17 41988787 41988787 1 - 1.632 1.557 -0.255
ENSG00000168259 E047 72.4967486 0.0029559252 1.297258e-01 3.820871e-01 17 41988788 41988873 86 - 1.893 1.838 -0.186
ENSG00000168259 E048 37.6334357 0.0125305357 6.305110e-01 8.414996e-01 17 41988874 41988896 23 - 1.599 1.575 -0.083
ENSG00000168259 E049 28.8621175 0.0181526804 9.161841e-01 9.737053e-01 17 41989404 41989418 15 - 1.476 1.474 -0.006
ENSG00000168259 E050 69.4414405 0.0009471343 4.906175e-01 7.531759e-01 17 41989419 41989557 139 - 1.857 1.838 -0.065
ENSG00000168259 E051 74.2298671 0.0002443876 5.594020e-03 5.376121e-02 17 41990264 41990382 119 - 1.919 1.830 -0.300
ENSG00000168259 E052 0.1272623 0.0122890552 5.214904e-01   17 41992608 41992798 191 - 0.000 0.097 11.507
ENSG00000168259 E053 0.0000000       17 41992799 41992867 69 -      
ENSG00000168259 E054 31.6542429 0.0010428877 2.871076e-02 1.586978e-01 17 41994870 41994874 5 - 1.567 1.456 -0.380
ENSG00000168259 E055 53.1070753 0.0002857640 7.757415e-03 6.766754e-02 17 41994875 41994944 70 - 1.782 1.680 -0.346
ENSG00000168259 E056 0.2435110 0.0161097100 9.802318e-01   17 41994945 41994983 39 - 0.093 0.097 0.067
ENSG00000168259 E057 0.3806233 0.0158620324 9.700401e-02   17 41995819 41996310 492 - 0.000 0.243 13.042
ENSG00000168259 E058 29.6014290 0.0004688409 6.152315e-02 2.491882e-01 17 41996311 41996325 15 - 1.532 1.436 -0.327
ENSG00000168259 E059 60.3899453 0.0002400377 4.965044e-02 2.198366e-01 17 41996326 41996424 99 - 1.821 1.753 -0.231
ENSG00000168259 E060 35.7384565 0.0004019666 9.708230e-02 3.245218e-01 17 41997115 41997136 22 - 1.602 1.526 -0.259
ENSG00000168259 E061 59.3459406 0.0002731035 1.161000e-01 3.592504e-01 17 41997137 41997239 103 - 1.807 1.753 -0.183
ENSG00000168259 E062 31.7258215 0.0004414853 8.473690e-01 9.458979e-01 17 42000482 42000556 75 - 1.506 1.523 0.056
ENSG00000168259 E063 8.4513699 0.0298598282 8.229418e-01 9.356232e-01 17 42000557 42000570 14 - 0.960 0.990 0.109
ENSG00000168259 E064 0.1265070 0.0122863817 5.213565e-01   17 42000956 42001066 111 - 0.000 0.097 11.507
ENSG00000168259 E065 3.6215081 0.1171353099 9.674162e-03 7.863847e-02 17 42003359 42003557 199 - 0.386 0.830 2.007
ENSG00000168259 E066 0.4992000 0.5234874829 5.658696e-01   17 42011051 42011275 225 - 0.093 0.243 1.651
ENSG00000168259 E067 5.1278399 0.0031355744 1.782357e-04 3.806623e-03 17 42012982 42015554 2573 - 0.499 0.955 1.897
ENSG00000168259 E068 2.0780210 0.0071345493 8.605950e-01 9.516858e-01 17 42015555 42016586 1032 - 0.499 0.478 -0.103
ENSG00000168259 E069 0.6351480 0.0249882641 1.949319e-02 1.249519e-01 17 42016587 42017039 453 - 0.000 0.353 13.712
ENSG00000168259 E070 0.0000000       17 42017040 42017051 12 -      
ENSG00000168259 E071 0.0000000       17 42017052 42017339 288 -      
ENSG00000168259 E072 0.0000000       17 42017340 42017622 283 -      
ENSG00000168259 E073 0.3618970 0.0165173237 6.035494e-01   17 42017675 42017862 188 - 0.170 0.097 -0.933
ENSG00000168259 E074 0.2444846 0.0163613470 9.799244e-01   17 42018438 42018526 89 - 0.093 0.097 0.067
ENSG00000168259 E075 0.0000000       17 42021323 42021376 54 -      

Help

Please Click HERE to learn more details about the results from DEXseq.