ENSG00000169604

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000303714 ENSG00000169604 No_inf pgKDN_inf ANTXR1 protein_coding protein_coding 58.19402 71.26528 60.95158 2.408859 0.8572634 -0.2255015 15.91492 13.07402 21.19993 0.8507990 0.6683456 0.69693447 0.2844083 0.185350 0.347625 0.162275 0.01673194 0.01673194 FALSE TRUE
MSTRG.16437.11 ENSG00000169604 No_inf pgKDN_inf ANTXR1 protein_coding   58.19402 71.26528 60.95158 2.408859 0.8572634 -0.2255015 11.44322 13.64252 12.92776 0.3067634 0.3760810 -0.07757991 0.1958500 0.191925 0.212075 0.020150 0.86474293 0.01673194 FALSE TRUE
MSTRG.16437.14 ENSG00000169604 No_inf pgKDN_inf ANTXR1 protein_coding   58.19402 71.26528 60.95158 2.408859 0.8572634 -0.2255015 27.47148 37.66016 25.25284 1.0069608 0.4789061 -0.57640531 0.4677750 0.528900 0.414500 -0.114400 0.14175870 0.01673194 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000169604 E001 0.2373413 1.575202e-02 1.909282e-01   2 69013176 69013178 3 + 0.185 0.000 -10.951
ENSG00000169604 E002 2.0480335 1.213119e-01 1.014169e-01 3.325320e-01 2 69013179 69013225 47 + 0.622 0.328 -1.502
ENSG00000169604 E003 3.8827849 3.681555e-03 6.266928e-02 2.515259e-01 2 69013226 69013305 80 + 0.801 0.569 -0.976
ENSG00000169604 E004 2.9254825 5.325752e-03 2.285044e-01 5.171860e-01 2 69013306 69013356 51 + 0.674 0.512 -0.725
ENSG00000169604 E005 4.0391597 3.772045e-03 5.234516e-01 7.767096e-01 2 69013357 69013396 40 + 0.742 0.663 -0.327
ENSG00000169604 E006 6.4660124 2.658041e-03 2.051906e-01 4.884474e-01 2 69013397 69013439 43 + 0.940 0.807 -0.512
ENSG00000169604 E007 12.6951720 2.012186e-03 1.115349e-01 3.506980e-01 2 69013440 69013499 60 + 1.201 1.072 -0.461
ENSG00000169604 E008 18.4909386 8.055744e-04 1.102161e-03 1.614886e-02 2 69013500 69013651 152 + 1.397 1.175 -0.777
ENSG00000169604 E009 5.7161852 6.040312e-03 6.820291e-02 2.635186e-01 2 69040044 69040048 5 + 0.927 0.723 -0.798
ENSG00000169604 E010 13.2688881 8.332105e-02 1.286758e-01 3.804408e-01 2 69040049 69040115 67 + 1.249 1.056 -0.691
ENSG00000169604 E011 0.1265070 1.237616e-02 6.333338e-01   2 69044019 69044059 41 + 0.000 0.088 10.762
ENSG00000169604 E012 16.1437120 9.559059e-03 2.499915e-01 5.409338e-01 2 69044742 69044813 72 + 1.281 1.188 -0.326
ENSG00000169604 E013 1.1324619 1.393876e-02 2.636310e-02 1.504940e-01 2 69044814 69049227 4414 + 0.102 0.448 2.761
ENSG00000169604 E014 19.2108288 9.380742e-04 2.087947e-01 4.928502e-01 2 69070647 69070728 82 + 1.348 1.264 -0.294
ENSG00000169604 E015 18.4153820 7.309415e-04 8.495561e-01 9.464823e-01 2 69071754 69071787 34 + 1.293 1.279 -0.046
ENSG00000169604 E016 24.1845993 8.480676e-04 7.138264e-01 8.847290e-01 2 69073022 69073101 80 + 1.410 1.388 -0.078
ENSG00000169604 E017 25.4023544 1.214162e-03 5.842536e-01 8.151679e-01 2 69075590 69075658 69 + 1.437 1.404 -0.114
ENSG00000169604 E018 1.6308117 1.174922e-01 5.051347e-02 2.221094e-01 2 69075659 69077407 1749 + 0.185 0.541 2.220
ENSG00000169604 E019 36.0599207 3.964561e-04 4.082008e-01 6.905866e-01 2 69077408 69077488 81 + 1.588 1.547 -0.141
ENSG00000169604 E020 0.6260544 1.499587e-02 2.363392e-01 5.254313e-01 2 69086179 69089377 3199 + 0.102 0.279 1.761
ENSG00000169604 E021 0.7460776 3.609066e-01 6.427826e-01 8.485995e-01 2 69090646 69090858 213 + 0.185 0.279 0.760
ENSG00000169604 E022 26.2561647 5.276585e-04 1.847341e-02 1.202879e-01 2 69090859 69090919 61 + 1.503 1.367 -0.468
ENSG00000169604 E023 0.3639133 2.217797e-01 5.427100e-01   2 69090920 69091098 179 + 0.185 0.088 -1.240
ENSG00000169604 E024 33.5173225 3.869767e-04 6.527941e-02 2.571982e-01 2 69102842 69102940 99 + 1.585 1.491 -0.323
ENSG00000169604 E025 2.2243864 2.958356e-02 5.782556e-01 8.115317e-01 2 69102941 69103444 504 + 0.457 0.541 0.413
ENSG00000169604 E026 26.3149662 3.848130e-03 1.950988e-01 4.753764e-01 2 69123017 69123086 70 + 1.477 1.396 -0.279
ENSG00000169604 E027 24.1960515 1.915995e-02 8.373497e-01 9.417282e-01 2 69124565 69124643 79 + 1.392 1.404 0.040
ENSG00000169604 E028 1.2630867 1.211592e-01 3.154773e-02 1.677140e-01 2 69134995 69135169 175 + 0.102 0.481 2.931
ENSG00000169604 E029 1.4957101 9.121803e-03 1.398847e-01 3.978559e-01 2 69144285 69144399 115 + 0.255 0.481 1.346
ENSG00000169604 E030 2.9224698 1.046886e-01 5.446497e-01 7.910577e-01 2 69145326 69145327 2 + 0.649 0.541 -0.479
ENSG00000169604 E031 71.7362608 2.172859e-04 2.228441e-01 5.102907e-01 2 69145328 69146401 1074 + 1.834 1.877 0.144
ENSG00000169604 E032 14.2750101 1.011801e-03 5.501494e-01 7.946935e-01 2 69152169 69152264 96 + 1.155 1.201 0.161
ENSG00000169604 E033 1.4432132 8.747800e-03 4.260968e-02 2.012004e-01 2 69170000 69170146 147 + 0.531 0.224 -1.824
ENSG00000169604 E034 8.7118923 1.907108e-03 9.218119e-01 9.757406e-01 2 69170248 69170289 42 + 0.990 0.981 -0.036
ENSG00000169604 E035 0.2442663 1.651975e-02 8.984326e-01   2 69170290 69170618 329 + 0.102 0.088 -0.239
ENSG00000169604 E036 0.5076982 1.992400e-01 1.027687e-01 3.351307e-01 2 69172367 69172558 192 + 0.000 0.279 12.143
ENSG00000169604 E037 16.0497901 8.787050e-04 3.967679e-01 6.813315e-01 2 69181786 69181881 96 + 1.262 1.201 -0.217
ENSG00000169604 E038 30.1278883 4.608251e-04 4.054208e-03 4.282406e-02 2 69182493 69182660 168 + 1.570 1.415 -0.532
ENSG00000169604 E039 17.9650676 7.889919e-04 1.179961e-01 3.628034e-01 2 69193335 69193415 81 + 1.332 1.225 -0.377
ENSG00000169604 E040 1102.0073496 4.353197e-05 3.562427e-08 2.276492e-06 2 69245225 69249327 4103 + 3.023 3.052 0.094

Help

Please Click HERE to learn more details about the results from DEXseq.