ENSG00000169727

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000306823 ENSG00000169727 No_inf pgKDN_inf GPS1 protein_coding protein_coding 51.56036 50.02647 50.31247 1.624377 1.190583 0.008222705 5.279005 8.815299 6.769417 3.3467681 2.4468887 -0.3804840 0.10449167 0.176825 0.131675 -0.045150 9.632555e-01 3.451551e-06 FALSE TRUE
ENST00000392358 ENSG00000169727 No_inf pgKDN_inf GPS1 protein_coding protein_coding 51.56036 50.02647 50.31247 1.624377 1.190583 0.008222705 4.338178 5.496336 2.525948 1.0937812 0.2697729 -1.1185674 0.08448333 0.112050 0.050000 -0.062050 4.156655e-01 3.451551e-06 FALSE TRUE
ENST00000578552 ENSG00000169727 No_inf pgKDN_inf GPS1 protein_coding protein_coding 51.56036 50.02647 50.31247 1.624377 1.190583 0.008222705 24.116274 12.804351 29.694324 3.5490992 1.8658940 1.2129125 0.46637500 0.255375 0.593150 0.337775 1.058407e-02 3.451551e-06 FALSE TRUE
ENST00000583983 ENSG00000169727 No_inf pgKDN_inf GPS1 protein_coding protein_coding_CDS_not_defined 51.56036 50.02647 50.31247 1.624377 1.190583 0.008222705 2.176497 3.281173 0.000000 0.3419622 0.0000000 -8.3624579 0.04169167 0.066425 0.000000 -0.066425 3.451551e-06 3.451551e-06 TRUE FALSE
ENST00000623691 ENSG00000169727 No_inf pgKDN_inf GPS1 protein_coding protein_coding 51.56036 50.02647 50.31247 1.624377 1.190583 0.008222705 5.041069 5.173212 3.079280 1.8148348 1.7780233 -0.7465755 0.09758333 0.104575 0.061425 -0.043150 8.181276e-01 3.451551e-06 FALSE TRUE
MSTRG.13492.7 ENSG00000169727 No_inf pgKDN_inf GPS1 protein_coding   51.56036 50.02647 50.31247 1.624377 1.190583 0.008222705 4.609319 5.532944 3.693685 0.2975005 0.2934814 -0.5816911 0.08943333 0.110700 0.073450 -0.037250 6.916020e-01 3.451551e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000169727 E001 0.0000000       17 82050691 82050947 257 +      
ENSG00000169727 E002 0.0000000       17 82050948 82051091 144 +      
ENSG00000169727 E003 0.0000000       17 82051092 82051143 52 +      
ENSG00000169727 E004 0.0000000       17 82051175 82051476 302 +      
ENSG00000169727 E005 0.0000000       17 82051477 82051499 23 +      
ENSG00000169727 E006 0.0000000       17 82051500 82051524 25 +      
ENSG00000169727 E007 0.1170040 0.0116251545 0.5011325758   17 82051735 82051837 103 + 0.099 0.000 -9.198
ENSG00000169727 E008 0.8503010 0.0334266242 0.6447090990 0.84951504 17 82051875 82051892 18 + 0.305 0.232 -0.533
ENSG00000169727 E009 0.8503010 0.0334266242 0.6447090990 0.84951504 17 82051893 82051896 4 + 0.305 0.232 -0.533
ENSG00000169727 E010 0.8503010 0.0334266242 0.6447090990 0.84951504 17 82051897 82051897 1 + 0.305 0.232 -0.533
ENSG00000169727 E011 1.0947856 0.0625176482 0.6847563173 0.86959377 17 82051898 82051900 3 + 0.357 0.288 -0.440
ENSG00000169727 E012 1.3489019 0.0976155360 0.8671365525 0.95423075 17 82051901 82051901 1 + 0.357 0.382 0.146
ENSG00000169727 E013 3.1709403 0.1671553488 0.7144694850 0.88491888 17 82051902 82051907 6 + 0.660 0.582 -0.339
ENSG00000169727 E014 3.1709403 0.1671553488 0.7144694850 0.88491888 17 82051908 82051908 1 + 0.660 0.582 -0.339
ENSG00000169727 E015 6.8227872 0.0358749961 0.2966112146 0.58978872 17 82051909 82051924 16 + 0.962 0.822 -0.534
ENSG00000169727 E016 7.3218241 0.0463662468 0.4746479688 0.74133162 17 82051925 82051926 2 + 0.974 0.866 -0.408
ENSG00000169727 E017 9.4058774 0.0431952727 0.4766652740 0.74309258 17 82051927 82051928 2 + 1.069 0.965 -0.382
ENSG00000169727 E018 15.3028027 0.0013301705 0.5092984827 0.76727284 17 82051929 82051957 29 + 1.239 1.186 -0.188
ENSG00000169727 E019 15.4210325 0.0013210858 0.4543627326 0.72705535 17 82051958 82051964 7 + 1.245 1.186 -0.210
ENSG00000169727 E020 8.4420716 0.0019091619 0.0040488357 0.04280084 17 82051965 82052232 268 + 0.803 1.081 1.044
ENSG00000169727 E021 2.2392691 0.0062461743 0.0801153238 0.29056149 17 82052233 82052241 9 + 0.357 0.608 1.260
ENSG00000169727 E022 2.2392691 0.0062461743 0.0801153238 0.29056149 17 82052242 82052255 14 + 0.357 0.608 1.260
ENSG00000169727 E023 2.2377610 0.0062475789 0.0801914382 0.29066163 17 82052256 82052258 3 + 0.357 0.608 1.260
ENSG00000169727 E024 6.1996892 0.0024186902 0.0213717306 0.13244432 17 82052259 82052374 116 + 0.706 0.954 0.969
ENSG00000169727 E025 3.7532308 0.0038317450 0.0014882341 0.02035153 17 82052375 82052377 3 + 0.403 0.822 1.882
ENSG00000169727 E026 5.1245122 0.0028019313 0.0005779437 0.00977448 17 82052378 82052442 65 + 0.518 0.930 1.712
ENSG00000169727 E027 1.7431545 0.0125179859 0.1412768127 0.39981234 17 82052443 82052459 17 + 0.305 0.525 1.203
ENSG00000169727 E028 3.1581361 0.0044513511 0.1780075680 0.45281182 17 82052460 82052569 110 + 0.706 0.525 -0.796
ENSG00000169727 E029 10.4559418 0.0079449940 0.4148320659 0.69506827 17 82052570 82052815 246 + 1.018 1.089 0.257
ENSG00000169727 E030 13.2500316 0.0012226886 0.0084854262 0.07189627 17 82052816 82053233 418 + 1.029 1.236 0.742
ENSG00000169727 E031 3.0099511 0.0049788738 0.0013316510 0.01867428 17 82053234 82053253 20 + 0.305 0.756 2.204
ENSG00000169727 E032 2.4945127 0.0062324876 0.0353126864 0.17986159 17 82053254 82053273 20 + 0.357 0.656 1.467
ENSG00000169727 E033 29.4207406 0.0009302493 0.8704598978 0.95538850 17 82053274 82053366 93 + 1.489 1.476 -0.046
ENSG00000169727 E034 0.6252366 0.0328518564 0.2042475135 0.48706218 17 82053367 82053785 419 + 0.099 0.288 1.882
ENSG00000169727 E035 49.5697819 0.0064884980 0.4288490041 0.70725528 17 82053868 82054049 182 + 1.726 1.681 -0.154
ENSG00000169727 E036 0.2455571 0.0161846175 0.9557102589   17 82054050 82054497 448 + 0.099 0.092 -0.118
ENSG00000169727 E037 4.4174224 0.0036071627 0.9060126617 0.97000331 17 82054498 82054509 12 + 0.727 0.737 0.042
ENSG00000169727 E038 84.0707531 0.0058360328 0.2345445280 0.52361127 17 82054510 82054810 301 + 1.957 1.903 -0.181
ENSG00000169727 E039 31.9282924 0.0005749378 0.5870935843 0.81688005 17 82054898 82054951 54 + 1.503 1.527 0.082
ENSG00000169727 E040 27.2247970 0.0063877208 0.8881545297 0.96259724 17 82054952 82054975 24 + 1.455 1.444 -0.040
ENSG00000169727 E041 0.2459655 0.0161601388 0.9553324045   17 82054976 82055161 186 + 0.099 0.092 -0.118
ENSG00000169727 E042 18.0966936 0.0076667374 0.3175462884 0.61031079 17 82055162 82055164 3 + 1.320 1.242 -0.274
ENSG00000169727 E043 37.7653086 0.0004082418 0.8636608424 0.95286251 17 82055165 82055222 58 + 1.594 1.581 -0.043
ENSG00000169727 E044 5.3349768 0.0224641456 0.0606898566 0.24737354 17 82055223 82055739 517 + 0.660 0.893 0.932
ENSG00000169727 E045 39.9389892 0.0004773605 0.5902440904 0.81864587 17 82055740 82055825 86 + 1.626 1.597 -0.101
ENSG00000169727 E046 2.2385459 0.0089358005 0.0820766350 0.29481993 17 82055826 82056000 175 + 0.357 0.608 1.260
ENSG00000169727 E047 40.3183013 0.0003489934 0.7914279221 0.92014711 17 82056001 82056095 95 + 1.624 1.607 -0.057
ENSG00000169727 E048 0.0000000       17 82056096 82056149 54 +      
ENSG00000169727 E049 0.3720293 0.0167533528 0.6290349087   17 82056150 82056285 136 + 0.099 0.167 0.882
ENSG00000169727 E050 46.7597997 0.0003104410 0.6230281556 0.83769753 17 82056286 82056391 106 + 1.669 1.685 0.056
ENSG00000169727 E051 0.2455571 0.0161846175 0.9557102589   17 82056392 82056469 78 + 0.099 0.092 -0.118
ENSG00000169727 E052 36.2959591 0.0021079826 0.9315099922 0.97999201 17 82056470 82056523 54 + 1.571 1.570 -0.001
ENSG00000169727 E053 24.4086054 0.0115271617 0.1575554745 0.42417995 17 82056524 82056550 27 + 1.459 1.350 -0.379
ENSG00000169727 E054 43.4960137 0.0061881858 0.1276280402 0.37873911 17 82056629 82056766 138 + 1.692 1.605 -0.297
ENSG00000169727 E055 0.2533610 0.0163398999 0.2677300508   17 82056767 82056772 6 + 0.000 0.167 11.929
ENSG00000169727 E056 0.8787513 0.0124055996 0.0609815132 0.24792529 17 82056773 82056839 67 + 0.099 0.382 2.467
ENSG00000169727 E057 49.9467768 0.0020718553 0.2974663095 0.59058001 17 82056840 82056974 135 + 1.733 1.681 -0.175
ENSG00000169727 E058 3.3305931 0.0369963999 0.5042835633 0.76347490 17 82056975 82057052 78 + 0.580 0.678 0.423
ENSG00000169727 E059 87.2601137 0.0007068052 0.5032828487 0.76277982 17 82057053 82057470 418 + 1.935 1.952 0.056

Help

Please Click HERE to learn more details about the results from DEXseq.