ENSG00000170832

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000300896 ENSG00000170832 No_inf pgKDN_inf USP32 protein_coding protein_coding 17.77189 15.02387 19.55444 1.43151 1.515102 0.380018 3.591032 4.2733325 3.258411 1.6797971 1.8848401 -0.3901441 0.2064000 0.264550 0.182125 -0.082425 8.273570e-01 2.381404e-05 FALSE TRUE
ENST00000590297 ENSG00000170832 No_inf pgKDN_inf USP32 protein_coding protein_coding 17.77189 15.02387 19.55444 1.43151 1.515102 0.380018 1.147699 2.1815616 0.000000 0.3851260 0.0000000 -7.7758154 0.0702250 0.146275 0.000000 -0.146275 2.381404e-05 2.381404e-05   FALSE
ENST00000592339 ENSG00000170832 No_inf pgKDN_inf USP32 protein_coding protein_coding 17.77189 15.02387 19.55444 1.43151 1.515102 0.380018 4.636697 0.6194143 6.717969 0.6194143 0.9612326 3.4180892 0.2502833 0.056350 0.342400 0.286050 2.762005e-02 2.381404e-05 FALSE TRUE
ENST00000593071 ENSG00000170832 No_inf pgKDN_inf USP32 protein_coding protein_coding 17.77189 15.02387 19.55444 1.43151 1.515102 0.380018 2.546849 3.9697081 2.704744 1.3659858 1.5785820 -0.5518466 0.1364500 0.241950 0.124000 -0.117950 7.793839e-01 2.381404e-05 FALSE FALSE
MSTRG.13049.1 ENSG00000170832 No_inf pgKDN_inf USP32 protein_coding   17.77189 15.02387 19.55444 1.43151 1.515102 0.380018 5.024402 3.5566240 6.033168 1.3511686 1.5111015 0.7607459 0.2922750 0.262825 0.308875 0.046050 8.619267e-01 2.381404e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000170832 E001 2.4779626 0.0059379204 4.955011e-02 2.196101e-01 17 60177317 60177326 10 - 0.396 0.668 1.297
ENSG00000170832 E002 84.2169781 0.0003915867 1.251453e-09 1.044828e-07 17 60177327 60179104 1778 - 1.838 2.018 0.606
ENSG00000170832 E003 2.9492819 0.0130717159 1.422365e-01 4.012287e-01 17 60179105 60179110 6 - 0.495 0.694 0.890
ENSG00000170832 E004 28.9123256 0.0009852724 4.833692e-01 7.479678e-01 17 60179111 60179428 318 - 1.457 1.493 0.123
ENSG00000170832 E005 14.4319747 0.0009503434 2.362074e-01 5.254188e-01 17 60180545 60180637 93 - 1.145 1.232 0.306
ENSG00000170832 E006 33.6238049 0.0006510310 9.548374e-01 9.889918e-01 17 60181324 60181748 425 - 1.539 1.534 -0.017
ENSG00000170832 E007 6.1980027 0.0290246375 6.173944e-01 8.343201e-01 17 60183165 60183185 21 - 0.881 0.822 -0.228
ENSG00000170832 E008 20.7390515 0.0006468929 1.017433e-01 3.331366e-01 17 60183186 60183453 268 - 1.380 1.273 -0.373
ENSG00000170832 E009 16.3944495 0.0042793385 2.484862e-01 5.393324e-01 17 60185460 60185651 192 - 1.276 1.186 -0.316
ENSG00000170832 E010 0.1268540 0.0122938552 4.022805e-01   17 60185652 60185933 282 - 0.000 0.108 11.042
ENSG00000170832 E011 15.6869194 0.0492316817 3.260672e-02 1.711312e-01 17 60190563 60190683 121 - 1.313 1.068 -0.872
ENSG00000170832 E012 11.8635703 0.0181347920 1.084145e-01 3.453563e-01 17 60192844 60192930 87 - 1.171 1.012 -0.574
ENSG00000170832 E013 18.8998110 0.0034774645 8.147116e-01 9.323561e-01 17 60198260 60198444 185 - 1.290 1.304 0.049
ENSG00000170832 E014 12.4674432 0.0498571426 4.299275e-01 7.079389e-01 17 60205447 60205658 212 - 1.089 1.170 0.292
ENSG00000170832 E015 7.1826148 0.0168910329 9.479607e-01 9.864316e-01 17 60207021 60207132 112 - 0.916 0.905 -0.039
ENSG00000170832 E016 0.0000000       17 60207729 60208058 330 -      
ENSG00000170832 E017 0.0000000       17 60208059 60208210 152 -      
ENSG00000170832 E018 4.4935015 0.0401145344 5.748843e-01 8.096357e-01 17 60208654 60208828 175 - 0.770 0.694 -0.312
ENSG00000170832 E019 3.7671269 0.0321883196 6.632679e-01 8.597676e-01 17 60209370 60209416 47 - 0.703 0.641 -0.259
ENSG00000170832 E020 4.0107016 0.0737384681 7.012964e-01 8.783159e-01 17 60209417 60209543 127 - 0.721 0.669 -0.217
ENSG00000170832 E021 1.6868529 0.0084601189 2.740061e-01 5.676355e-01 17 60211013 60211118 106 - 0.495 0.328 -0.918
ENSG00000170832 E022 5.4922599 0.0569232699 9.416938e-01 9.835583e-01 17 60211376 60211514 139 - 0.801 0.822 0.082
ENSG00000170832 E023 5.0173263 0.0619270486 6.192731e-01 8.353519e-01 17 60212024 60212098 75 - 0.738 0.822 0.334
ENSG00000170832 E024 1.3676658 0.0403210337 5.728065e-02 2.392537e-01 17 60213581 60213662 82 - 0.214 0.512 1.819
ENSG00000170832 E025 1.8003343 0.0107060732 6.520470e-02 2.570912e-01 17 60214620 60214774 155 - 0.551 0.266 -1.596
ENSG00000170832 E026 0.2543986 0.0161416703 1.590279e-01   17 60219571 60219627 57 - 0.000 0.194 11.970
ENSG00000170832 E027 0.7175981 0.0262992612 1.814662e-01 4.574740e-01 17 60219628 60219635 8 - 0.315 0.108 -1.918
ENSG00000170832 E028 1.0824200 0.1506911754 2.617817e-01 5.545462e-01 17 60219636 60219669 34 - 0.396 0.194 -1.404
ENSG00000170832 E029 5.7145262 0.0172633684 5.633193e-01 8.026964e-01 17 60219670 60219787 118 - 0.856 0.783 -0.284
ENSG00000170832 E030 10.6469503 0.0521473126 1.894561e-01 4.681630e-01 17 60222409 60222549 141 - 1.132 0.962 -0.621
ENSG00000170832 E031 10.9169280 0.0015371878 2.282593e-01 5.167886e-01 17 60223411 60223586 176 - 1.118 1.012 -0.384
ENSG00000170832 E032 7.6514851 0.0074019367 6.153910e-01 8.330948e-01 17 60226039 60226175 137 - 0.958 0.905 -0.200
ENSG00000170832 E033 2.7893828 0.0240439741 7.354275e-01 8.951119e-01 17 60226176 60226182 7 - 0.600 0.548 -0.233
ENSG00000170832 E034 4.4707850 0.0063897414 2.008743e-01 4.829471e-01 17 60226183 60226231 49 - 0.801 0.641 -0.655
ENSG00000170832 E035 7.3869000 0.0143051275 2.124872e-01 4.977026e-01 17 60236138 60236240 103 - 0.978 0.840 -0.526
ENSG00000170832 E036 0.8712646 0.0259752371 1.354186e-01 3.910723e-01 17 60249058 60249753 696 - 0.154 0.382 1.726
ENSG00000170832 E037 5.2221497 0.0050250777 4.553932e-01 7.278895e-01 17 60252381 60252442 62 - 0.829 0.741 -0.351
ENSG00000170832 E038 4.7542956 0.0029337139 9.328656e-01 9.805938e-01 17 60255175 60255258 84 - 0.754 0.762 0.032
ENSG00000170832 E039 0.0000000       17 60256631 60256700 70 -      
ENSG00000170832 E040 4.7460581 0.1037240449 8.466078e-01 9.456157e-01 17 60265412 60265474 63 - 0.754 0.762 0.034
ENSG00000170832 E041 6.6602870 0.0895367176 5.910477e-01 8.190957e-01 17 60265976 60266091 116 - 0.926 0.822 -0.401
ENSG00000170832 E042 6.0323007 0.0025876199 6.226841e-02 2.506257e-01 17 60269450 60269557 108 - 0.927 0.718 -0.818
ENSG00000170832 E043 7.3829582 0.0020174837 1.787526e-01 4.537081e-01 17 60271350 60271481 132 - 0.978 0.840 -0.525
ENSG00000170832 E044 6.2108189 0.0385500001 9.723245e-01 9.947660e-01 17 60288523 60288682 160 - 0.855 0.857 0.006
ENSG00000170832 E045 5.9621505 0.0042419203 9.961232e-01 1.000000e+00 17 60294683 60294801 119 - 0.842 0.840 -0.011
ENSG00000170832 E046 0.3724075 0.0166008099 4.215343e-01   17 60301450 60301598 149 - 0.084 0.194 1.404
ENSG00000170832 E047 3.6153828 0.0041185633 1.492638e-01 4.115499e-01 17 60301599 60301704 106 - 0.738 0.548 -0.818
ENSG00000170832 E048 0.1272623 0.0124561352 4.020598e-01   17 60304907 60305043 137 - 0.000 0.108 11.041
ENSG00000170832 E049 0.0000000       17 60305143 60305228 86 -      
ENSG00000170832 E050 0.3550369 0.0266965038 1.730030e-01   17 60332191 60332245 55 - 0.214 0.000 -12.749
ENSG00000170832 E051 4.5426603 0.0205266905 2.862451e-03 3.333695e-02 17 60345481 60345608 128 - 0.881 0.473 -1.743
ENSG00000170832 E052 2.5479478 0.0058906449 6.568409e-01 8.563945e-01 17 60391882 60392230 349 - 0.576 0.512 -0.296
ENSG00000170832 E053 0.1170040 0.0117086291 7.152479e-01   17 60392339 60392408 70 - 0.084 0.000 -11.337
ENSG00000170832 E054 1.5235613 0.0087189349 1.704960e-05 5.386953e-04 17 60421208 60421551 344 - 0.000 0.641 14.243
ENSG00000170832 E055 1.1337792 0.0108726284 4.245412e-03 4.427538e-02 17 60422246 60422470 225 - 0.084 0.512 3.404

Help

Please Click HERE to learn more details about the results from DEXseq.