ENSG00000172785

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000356521 ENSG00000172785 No_inf pgKDN_inf CBWD1 protein_coding protein_coding 81.64279 94.07278 83.50353 1.268283 1.345838 -0.1719207 7.606616 17.397161 3.333645 1.3392950 0.6614489 -2.3801875 0.08531667 0.185450 0.040250 -0.145200 1.603434e-04 1.602493e-08 FALSE TRUE
ENST00000377400 ENSG00000172785 No_inf pgKDN_inf CBWD1 protein_coding protein_coding 81.64279 94.07278 83.50353 1.268283 1.345838 -0.1719207 2.526595 0.000000 7.579785 0.0000000 4.4095120 9.5679151 0.03029167 0.000000 0.090875 0.090875 4.463150e-01 1.602493e-08 FALSE TRUE
ENST00000382389 ENSG00000172785 No_inf pgKDN_inf CBWD1 protein_coding protein_coding 81.64279 94.07278 83.50353 1.268283 1.345838 -0.1719207 2.089840 5.306140 0.000000 0.3023671 0.0000000 -9.0542353 0.02358333 0.056525 0.000000 -0.056525 1.602493e-08 1.602493e-08   FALSE
ENST00000382447 ENSG00000172785 No_inf pgKDN_inf CBWD1 protein_coding protein_coding 81.64279 94.07278 83.50353 1.268283 1.345838 -0.1719207 45.953208 44.956864 48.519493 4.9730970 8.7136436 0.1099995 0.57326667 0.476150 0.580925 0.104775 7.689512e-01 1.602493e-08 FALSE TRUE
MSTRG.28417.23 ENSG00000172785 No_inf pgKDN_inf CBWD1 protein_coding   81.64279 94.07278 83.50353 1.268283 1.345838 -0.1719207 5.602500 3.214089 7.973294 2.3372128 5.0546949 1.3080923 0.06891667 0.034850 0.094525 0.059675 9.801373e-01 1.602493e-08 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000172785 E001 4.1252977 0.0042823282 0.0121151453 0.091079396 9 120837 121040 204 - 0.475 0.812 1.465
ENSG00000172785 E002 0.0000000       9 121041 121051 11 -      
ENSG00000172785 E003 0.0000000       9 121052 121057 6 -      
ENSG00000172785 E004 0.0000000       9 121058 121059 2 -      
ENSG00000172785 E005 0.0000000       9 121060 121088 29 -      
ENSG00000172785 E006 0.0000000       9 121089 121090 2 -      
ENSG00000172785 E007 0.7516150 0.0144101427 0.1900998242 0.469130356 9 121091 121223 133 - 0.109 0.313 1.894
ENSG00000172785 E008 4.0799807 0.0035706726 0.5039995426 0.763348211 9 121224 121406 183 - 0.644 0.735 0.380
ENSG00000172785 E009 0.0000000       9 121407 121408 2 -      
ENSG00000172785 E010 0.0000000       9 121409 121409 1 -      
ENSG00000172785 E011 0.0000000       9 121410 121410 1 -      
ENSG00000172785 E012 0.3635961 0.0168057644 0.4042570892   9 121411 121417 7 - 0.195 0.083 -1.428
ENSG00000172785 E013 24.1603309 0.0005636838 0.7080359592 0.881616332 9 121418 121502 85 - 1.375 1.406 0.108
ENSG00000172785 E014 21.6849489 0.0006212726 0.8630772736 0.952721190 9 121503 121573 71 - 1.337 1.357 0.069
ENSG00000172785 E015 1.2684719 0.0107615720 0.0022944510 0.028291934 9 121574 121960 387 - 0.000 0.493 14.743
ENSG00000172785 E016 1.1416180 0.0106866449 0.0041106600 0.043293172 9 121961 122090 130 - 0.000 0.462 14.621
ENSG00000172785 E017 0.0000000       9 122091 122136 46 -      
ENSG00000172785 E018 3.6285195 0.0044387449 0.0156487910 0.108191501 9 122137 122690 554 - 0.432 0.767 1.511
ENSG00000172785 E019 0.0000000       9 122691 122842 152 -      
ENSG00000172785 E020 1.1040392 0.0663222252 0.8966760528 0.965963091 9 122843 123216 374 - 0.329 0.313 -0.105
ENSG00000172785 E021 0.0000000       9 123217 123282 66 -      
ENSG00000172785 E022 0.0000000       9 123386 123454 69 -      
ENSG00000172785 E023 0.7525266 0.0133984323 0.1897447660 0.468661578 9 123455 123747 293 - 0.109 0.313 1.894
ENSG00000172785 E024 0.2537694 0.0160263435 0.3727822642   9 134979 135030 52 - 0.000 0.153 12.745
ENSG00000172785 E025 0.0000000       9 146102 146113 12 -      
ENSG00000172785 E026 0.7526875 0.0144432171 0.1901941992 0.469231713 9 146114 146158 45 - 0.109 0.313 1.894
ENSG00000172785 E027 4.7597810 0.0032416608 0.0019981139 0.025551595 9 146159 147900 1742 - 0.475 0.878 1.719
ENSG00000172785 E028 0.5076336 0.0159844135 0.0909272371 0.313068744 9 147901 147949 49 - 0.000 0.266 13.633
ENSG00000172785 E029 0.6347699 0.0382959485 0.0504015448 0.221834251 9 147950 148040 91 - 0.000 0.313 13.864
ENSG00000172785 E030 0.0000000       9 148041 148044 4 -      
ENSG00000172785 E031 4.0828077 0.0262289745 0.5470066673 0.792581404 9 148045 149446 1402 - 0.644 0.735 0.380
ENSG00000172785 E032 0.3706473 0.0166023390 0.8009699673   9 150132 150508 377 - 0.109 0.153 0.572
ENSG00000172785 E033 1.1328056 0.0108205133 0.0432632803 0.202847344 9 150509 150641 133 - 0.109 0.429 2.572
ENSG00000172785 E034 0.3809057 0.0158321535 0.1809159956   9 150642 150655 14 - 0.000 0.213 13.270
ENSG00000172785 E035 0.2543986 0.0160815840 0.3726714593   9 150656 150725 70 - 0.000 0.153 12.745
ENSG00000172785 E036 1.2195049 0.1370415035 0.7291601581 0.892002699 9 150726 151304 579 - 0.383 0.313 -0.426
ENSG00000172785 E037 4.3536589 0.0033410631 0.0999748585 0.330415100 9 151305 151427 123 - 0.584 0.798 0.894
ENSG00000172785 E038 0.1170040 0.0116564069 0.3882035612   9 151428 151576 149 - 0.109 0.000 -12.915
ENSG00000172785 E039 0.0000000       9 151577 151744 168 -      
ENSG00000172785 E040 1.0156453 0.0115638045 0.0074693401 0.066008748 9 151745 152033 289 - 0.000 0.429 14.482
ENSG00000172785 E041 15.0604905 0.0012139324 0.5315182512 0.782138836 9 152034 152078 45 - 1.165 1.221 0.197
ENSG00000172785 E042 0.2451451 0.0163968823 0.8045198512   9 152914 154708 1795 - 0.109 0.083 -0.428
ENSG00000172785 E043 21.4549451 0.0049358549 0.7277934118 0.891319282 9 154709 154731 23 - 1.325 1.357 0.109
ENSG00000172785 E044 37.5986798 0.0009365377 0.5952029035 0.822020702 9 154732 154795 64 - 1.559 1.593 0.118
ENSG00000172785 E045 33.4991482 0.0087472096 0.2064831672 0.490121750 9 156481 156527 47 - 1.569 1.503 -0.226
ENSG00000172785 E046 0.0000000       9 160001 160087 87 -      
ENSG00000172785 E047 0.0000000       9 160088 160140 53 -      
ENSG00000172785 E048 0.0000000       9 161567 161654 88 -      
ENSG00000172785 E049 31.7736732 0.0004525707 0.0707653460 0.269430577 9 162432 162469 38 - 1.555 1.473 -0.283
ENSG00000172785 E050 45.4130736 0.0003308874 0.0004451048 0.007972859 9 163978 164037 60 - 1.735 1.598 -0.466
ENSG00000172785 E051 0.0000000       9 164038 164039 2 -      
ENSG00000172785 E052 0.1272623 0.0123618826 0.7415299190   9 164403 164448 46 - 0.000 0.083 11.827
ENSG00000172785 E053 0.3795211 0.5269449152 0.4087827357   9 165983 167605 1623 - 0.000 0.213 12.681
ENSG00000172785 E054 1.1157456 0.0111722427 0.5943232049 0.821545166 9 171596 171952 357 - 0.268 0.355 0.572
ENSG00000172785 E055 0.2537694 0.0160263435 0.3727822642   9 171953 172080 128 - 0.000 0.153 12.745
ENSG00000172785 E056 50.7875400 0.0038377061 0.0272170687 0.153388233 9 172081 172172 92 - 1.757 1.668 -0.302
ENSG00000172785 E057 9.9798311 0.0014379106 0.0013860915 0.019253685 9 172173 173269 1097 - 0.825 1.136 1.157
ENSG00000172785 E058 21.6093557 0.0015738159 0.2934336186 0.587038634 9 173270 173366 97 - 1.380 1.323 -0.198
ENSG00000172785 E059 0.0000000       9 173367 173371 5 -      
ENSG00000172785 E060 0.0000000       9 175698 175784 87 -      
ENSG00000172785 E061 0.0000000       9 177723 177820 98 -      
ENSG00000172785 E062 5.2100989 0.0083913817 0.2596480027 0.552100505 9 178816 179147 332 - 0.697 0.839 0.572

Help

Please Click HERE to learn more details about the results from DEXseq.