ENSG00000172819

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000338561 ENSG00000172819 No_inf pgKDN_inf RARG protein_coding protein_coding 18.51946 25.51244 15.29497 1.123049 0.7182707 -0.7377655 1.5533738 0.4670753 2.1973172 0.4670753 0.8992015 2.2100050 0.10754167 0.019450 0.151225 0.131775 0.28539783 0.04815629 FALSE  
ENST00000394426 ENSG00000172819 No_inf pgKDN_inf RARG protein_coding protein_coding 18.51946 25.51244 15.29497 1.123049 0.7182707 -0.7377655 8.9980649 10.1306083 8.9177208 0.7154835 0.5655882 -0.1837804 0.50683333 0.395800 0.584775 0.188975 0.18705234 0.04815629 FALSE  
ENST00000425354 ENSG00000172819 No_inf pgKDN_inf RARG protein_coding protein_coding 18.51946 25.51244 15.29497 1.123049 0.7182707 -0.7377655 1.1847230 2.7590983 0.4891167 0.5867772 0.2824703 -2.4719673 0.05573333 0.111300 0.032100 -0.079200 0.42307564 0.04815629 FALSE  
ENST00000548284 ENSG00000172819 No_inf pgKDN_inf RARG protein_coding retained_intron 18.51946 25.51244 15.29497 1.123049 0.7182707 -0.7377655 0.8880563 0.4997672 0.9593270 0.3089220 0.9593270 0.9271449 0.05307500 0.019650 0.057275 0.037625 0.94015740 0.04815629 FALSE  
ENST00000548317 ENSG00000172819 No_inf pgKDN_inf RARG protein_coding retained_intron 18.51946 25.51244 15.29497 1.123049 0.7182707 -0.7377655 1.0765386 1.1752444 0.5740601 0.8181516 0.5740601 -1.0209958 0.05686667 0.042350 0.035275 -0.007075 0.86588341 0.04815629 FALSE  
ENST00000550265 ENSG00000172819 No_inf pgKDN_inf RARG protein_coding retained_intron 18.51946 25.51244 15.29497 1.123049 0.7182707 -0.7377655 1.1583315 2.6270230 0.1818720 0.5163647 0.1818720 -3.7806940 0.05055833 0.101925 0.011175 -0.090750 0.04815629 0.04815629 FALSE  
ENST00000551580 ENSG00000172819 No_inf pgKDN_inf RARG protein_coding retained_intron 18.51946 25.51244 15.29497 1.123049 0.7182707 -0.7377655 3.5705710 7.7217987 1.9755595 0.3279300 0.3928420 -1.9612585 0.16520833 0.304900 0.128225 -0.176675 0.12645970 0.04815629    
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000172819 E001 0.1268540 0.0123110871 0.931385978   12 53210567 53210568 2 - 0.000 0.077 10.621
ENSG00000172819 E002 60.0088665 0.0002524916 0.063106939 0.252737036 12 53210569 53211330 762 - 1.801 1.752 -0.166
ENSG00000172819 E003 9.2360927 0.0018042870 0.412996423 0.693952688 12 53211331 53211392 62 - 1.034 0.973 -0.224
ENSG00000172819 E004 7.8108095 0.0020831057 0.007084762 0.063578958 12 53211393 53211413 21 - 1.069 0.824 -0.922
ENSG00000172819 E005 38.6630516 0.0003819981 0.986569034 0.999387360 12 53211414 53211863 450 - 1.574 1.590 0.055
ENSG00000172819 E006 13.9639766 0.0010711847 0.841763545 0.943210595 12 53213085 53213236 152 - 1.142 1.172 0.107
ENSG00000172819 E007 4.5865687 0.0043126942 0.478775956 0.744740094 12 53213237 53213243 7 - 0.670 0.770 0.408
ENSG00000172819 E008 2.7822781 0.0149177161 0.000276854 0.005443618 12 53213244 53213495 252 - 0.116 0.708 3.742
ENSG00000172819 E009 18.6131422 0.0008959296 0.113718032 0.355037241 12 53213496 53213700 205 - 1.196 1.321 0.437
ENSG00000172819 E010 1.8766465 0.0079162644 0.134753117 0.390248142 12 53213940 53214058 119 - 0.283 0.524 1.350
ENSG00000172819 E011 7.3071891 0.0240885180 0.750757931 0.901699291 12 53214059 53214093 35 - 0.872 0.926 0.205
ENSG00000172819 E012 16.7147842 0.0030719633 0.555678397 0.798049706 12 53214094 53214235 142 - 1.196 1.255 0.207
ENSG00000172819 E013 20.2413906 0.0007533381 0.794273433 0.921496456 12 53214446 53214606 161 - 1.314 1.313 -0.007
ENSG00000172819 E014 5.1133742 0.0028829471 0.063459023 0.253515887 12 53214607 53214857 251 - 0.609 0.849 0.982
ENSG00000172819 E015 9.2119659 0.0023430065 0.200004750 0.481913736 12 53215293 53215373 81 - 1.058 0.955 -0.380
ENSG00000172819 E016 6.6522473 0.0023194554 0.496404394 0.757393095 12 53215374 53215434 61 - 0.906 0.849 -0.220
ENSG00000172819 E017 0.2537694 0.0160727116 0.459622673   12 53215435 53215462 28 - 0.000 0.143 13.380
ENSG00000172819 E018 0.3815350 0.0277601768 0.239067378   12 53215463 53215645 183 - 0.000 0.200 13.878
ENSG00000172819 E019 9.2063650 0.0046652597 0.136635710 0.393323568 12 53215646 53215794 149 - 1.069 0.945 -0.458
ENSG00000172819 E020 9.5300794 0.0017553169 0.009161008 0.075873741 12 53219950 53220413 464 - 1.133 0.915 -0.799
ENSG00000172819 E021 0.9880155 0.0128511731 0.974135117 0.995387733 12 53227362 53227373 12 - 0.283 0.296 0.087
ENSG00000172819 E022 1.3795264 0.0104395912 0.155899172 0.421911082 12 53227374 53227447 74 - 0.208 0.441 1.519
ENSG00000172819 E023 0.7629136 0.0181172271 0.040663158 0.195657663 12 53227448 53227499 52 - 0.000 0.337 14.750
ENSG00000172819 E024 1.2620192 0.0124453241 0.047492480 0.214222583 12 53227500 53227555 56 - 0.116 0.441 2.519
ENSG00000172819 E025 0.7535042 0.1268675150 0.307905740 0.601194244 12 53227556 53227557 2 - 0.116 0.296 1.671
ENSG00000172819 E026 1.0071476 0.0423549595 0.120992785 0.368097070 12 53227558 53227597 40 - 0.116 0.374 2.157
ENSG00000172819 E027 0.6268712 0.0151633753 0.399613917 0.683381336 12 53227598 53227607 10 - 0.116 0.251 1.349
ENSG00000172819 E028 0.7533782 0.0143117162 0.262352420 0.555195613 12 53227608 53227634 27 - 0.116 0.296 1.671
ENSG00000172819 E029 0.8876277 0.0127283459 0.023062483 0.138559870 12 53227635 53227687 53 - 0.000 0.374 14.942
ENSG00000172819 E030 0.0000000       12 53229842 53229910 69 -      
ENSG00000172819 E031 0.1268540 0.0123110871 0.931385978   12 53229911 53230053 143 - 0.000 0.077 12.466
ENSG00000172819 E032 0.0000000       12 53230054 53230074 21 -      
ENSG00000172819 E033 0.0000000       12 53231168 53231168 1 -      
ENSG00000172819 E034 0.8881006 0.0140607628 0.023251496 0.139245690 12 53231169 53231232 64 - 0.000 0.374 14.939
ENSG00000172819 E035 0.3813786 0.0232914818 0.238453760   12 53231233 53231235 3 - 0.000 0.200 13.887
ENSG00000172819 E036 0.2539903 0.0160563136 0.459790963   12 53231391 53231550 160 - 0.000 0.143 13.380
ENSG00000172819 E037 1.0156453 0.0115796057 0.013470272 0.097568487 12 53231974 53232192 219 - 0.000 0.409 15.099
ENSG00000172819 E038 0.1265070 0.0123568943 0.931344729   12 53232193 53232256 64 - 0.000 0.077 12.466
ENSG00000172819 E039 0.0000000       12 53232511 53232763 253 -      
ENSG00000172819 E040 0.0000000       12 53232764 53232980 217 -      

Help

Please Click HERE to learn more details about the results from DEXseq.