ENSG00000173210

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000326685 ENSG00000173210 No_inf pgKDN_inf ABLIM3 protein_coding protein_coding 22.11919 24.2975 31.97501 8.654082 17.89889 0.3959941 3.7038538 6.5347662 2.4815814 0.4457593 0.35090331 -1.393280 0.40107500 0.346700 0.383125 0.036425 0.90837854 0.01217965 FALSE TRUE
ENST00000515171 ENSG00000173210 No_inf pgKDN_inf ABLIM3 protein_coding nonsense_mediated_decay 22.11919 24.2975 31.97501 8.654082 17.89889 0.3959941 0.7491649 1.8840578 0.2677920 0.1841903 0.17053181 -2.769404 0.04710833 0.104700 0.005500 -0.099200 0.06789750 0.01217965 FALSE TRUE
ENST00000517451 ENSG00000173210 No_inf pgKDN_inf ABLIM3 protein_coding protein_coding 22.11919 24.2975 31.97501 8.654082 17.89889 0.3959941 0.9777150 2.4926536 0.1130908 0.2472084 0.04807737 -4.345664 0.06765833 0.137775 0.013025 -0.124750 0.01217965 0.01217965 FALSE FALSE
MSTRG.23755.10 ENSG00000173210 No_inf pgKDN_inf ABLIM3 protein_coding   22.11919 24.2975 31.97501 8.654082 17.89889 0.3959941 2.1049897 0.0000000 0.0000000 0.0000000 0.00000000 0.000000 0.07076667 0.000000 0.000000 0.000000   0.01217965   FALSE
MSTRG.23755.16 ENSG00000173210 No_inf pgKDN_inf ABLIM3 protein_coding   22.11919 24.2975 31.97501 8.654082 17.89889 0.3959941 0.6092337 1.6439466 0.0000000 0.5928948 0.00000000 -7.369769 0.04584167 0.077750 0.000000 -0.077750 0.10100035 0.01217965   FALSE
MSTRG.23755.8 ENSG00000173210 No_inf pgKDN_inf ABLIM3 protein_coding   22.11919 24.2975 31.97501 8.654082 17.89889 0.3959941 12.1639313 8.4475104 28.0442836 8.4475104 17.81017675 1.729916 0.21183333 0.168200 0.467300 0.299100 0.79200987 0.01217965   FALSE
MSTRG.23755.9 ENSG00000173210 No_inf pgKDN_inf ABLIM3 protein_coding   22.11919 24.2975 31.97501 8.654082 17.89889 0.3959941 0.5625541 0.7821913 0.4030427 0.4546450 0.40304267 -0.939558 0.07177500 0.051200 0.083150 0.031950 0.84806826 0.01217965 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000173210 E001 0.0000000       5 149141483 149141492 10 +      
ENSG00000173210 E002 2.1925352 0.006933371 0.0009692828 0.014655817 5 149141493 149141613 121 + 0.764 0.301 -2.266
ENSG00000173210 E003 1.5949962 0.008369632 0.0351806850 0.179543778 5 149141614 149141654 41 + 0.589 0.273 -1.722
ENSG00000173210 E004 0.3724075 0.016829196 0.5253835762   5 149141655 149141750 96 + 0.170 0.097 -0.945
ENSG00000173210 E005 1.2451791 0.104261455 0.4639156195 0.733576434 5 149141751 149141820 70 + 0.388 0.273 -0.723
ENSG00000173210 E006 2.2618308 0.008843339 0.7266201129 0.890671117 5 149141821 149142008 188 + 0.388 0.458 0.377
ENSG00000173210 E007 2.8763335 0.005638982 0.8330346539 0.939766338 5 149142009 149142046 38 + 0.532 0.511 -0.096
ENSG00000173210 E008 4.2461975 0.057855727 0.5959821101 0.822426034 5 149142047 149142108 62 + 0.685 0.628 -0.244
ENSG00000173210 E009 4.4828174 0.003430179 0.2612596777 0.553948164 5 149183452 149183548 97 + 0.764 0.628 -0.566
ENSG00000173210 E010 2.1155912 0.109338079 0.3799724639 0.666594177 5 149183549 149183589 41 + 0.532 0.397 -0.682
ENSG00000173210 E011 5.3879699 0.014176925 0.8355174657 0.940856721 5 149198219 149198384 166 + 0.685 0.730 0.185
ENSG00000173210 E012 1.3606714 0.010774624 0.2112281171 0.496118855 5 149198385 149198402 18 + 0.466 0.273 -1.137
ENSG00000173210 E013 0.0000000       5 149199044 149199122 79 +      
ENSG00000173210 E014 3.9726349 0.003528412 0.1324682010 0.386337531 5 149200316 149200428 113 + 0.764 0.573 -0.807
ENSG00000173210 E015 0.2444846 0.016388852 0.2753673948   5 149200429 149200620 192 + 0.170 0.051 -1.945
ENSG00000173210 E016 0.6183116 0.020413348 0.3040336633 0.597533138 5 149202772 149202791 20 + 0.292 0.138 -1.360
ENSG00000173210 E017 4.8854734 0.002922124 0.7465255421 0.899702355 5 149207008 149207134 127 + 0.640 0.698 0.248
ENSG00000173210 E018 1.8689348 0.009615239 0.5336352927 0.784076222 5 149210726 149210819 94 + 0.466 0.375 -0.485
ENSG00000173210 E019 0.0000000       5 149216959 149217006 48 +      
ENSG00000173210 E020 0.0000000       5 149217007 149217046 40 +      
ENSG00000173210 E021 1.8678664 0.007499155 0.5346525666 0.784611205 5 149230649 149230695 47 + 0.466 0.375 -0.485
ENSG00000173210 E022 1.9860961 0.007032057 0.2895451164 0.583182526 5 149230696 149230707 12 + 0.532 0.375 -0.807
ENSG00000173210 E023 2.7307887 0.005455395 0.1925804115 0.472496058 5 149233229 149233252 24 + 0.640 0.458 -0.845
ENSG00000173210 E024 3.5913183 0.005345671 0.0702976907 0.268249303 5 149233253 149233300 48 + 0.764 0.528 -1.019
ENSG00000173210 E025 0.2442663 0.016210354 0.2753959102   5 149237448 149237603 156 + 0.170 0.051 -1.944
ENSG00000173210 E026 0.0000000       5 149239248 149239277 30 +      
ENSG00000173210 E027 6.2224740 0.004314580 0.1760536081 0.450204911 5 149239759 149239888 130 + 0.888 0.740 -0.582
ENSG00000173210 E028 1.1423119 0.072302838 0.1299696187 0.382400383 5 149240468 149240675 208 + 0.000 0.327 12.324
ENSG00000173210 E029 1.5056220 0.009587695 0.7712897699 0.911841217 5 149240676 149240774 99 + 0.292 0.352 0.377
ENSG00000173210 E030 0.0000000       5 149240862 149240878 17 +      
ENSG00000173210 E031 2.5139046 0.023881003 0.5845793655 0.815390736 5 149242491 149242538 48 + 0.387 0.494 0.558
ENSG00000173210 E032 0.6355253 0.025447575 0.3867909204 0.672637567 5 149242539 149242550 12 + 0.000 0.211 11.666
ENSG00000173210 E033 0.6352429 0.015087101 0.3831572927 0.669294134 5 149242551 149242584 34 + 0.000 0.211 11.677
ENSG00000173210 E034 8.9648315 0.007640164 0.0026076527 0.031046610 5 149243348 149244417 1070 + 0.532 0.965 1.778
ENSG00000173210 E035 4.0618898 0.003731393 0.0003520656 0.006636947 5 149244418 149244880 463 + 0.000 0.698 13.784
ENSG00000173210 E036 9.2727496 0.011356862 0.6077556182 0.829153299 5 149244881 149245015 135 + 0.860 0.935 0.286
ENSG00000173210 E037 7.8923417 0.020042430 0.6295375537 0.841140525 5 149246482 149246546 65 + 0.798 0.874 0.297
ENSG00000173210 E038 12.3813142 0.005912211 0.7537897719 0.903141121 5 149247782 149247929 148 + 1.045 1.031 -0.051
ENSG00000173210 E039 5.5142862 0.018824648 0.7875176084 0.918515088 5 149249815 149249844 30 + 0.685 0.740 0.226
ENSG00000173210 E040 0.1265070 0.012475632 1.0000000000   5 149250433 149250446 14 + 0.000 0.051 9.596
ENSG00000173210 E041 6.3861454 0.042497509 0.9882289284 0.999967725 5 149250447 149250505 59 + 0.764 0.786 0.092
ENSG00000173210 E042 5.9830273 0.043648187 0.4430474236 0.718202843 5 149251359 149251419 61 + 0.830 0.740 -0.359
ENSG00000173210 E043 0.0000000       5 149251420 149251428 9 +      
ENSG00000173210 E044 4.6055771 0.019340530 0.3237369962 0.616373587 5 149252201 149252208 8 + 0.764 0.640 -0.512
ENSG00000173210 E045 0.8726456 0.013189604 0.5865831896 0.816766949 5 149252344 149252754 411 + 0.292 0.211 -0.623
ENSG00000173210 E046 0.1271363 0.012410278 1.0000000000   5 149252755 149252756 2 + 0.000 0.051 9.596
ENSG00000173210 E047 8.4662786 0.001697947 0.1931170582 0.472942859 5 149252757 149252837 81 + 0.984 0.860 -0.471
ENSG00000173210 E048 68.5121097 0.002269744 0.4428349431 0.718037363 5 149258291 149259545 1255 + 1.703 1.751 0.163
ENSG00000173210 E049 40.8390534 0.006841427 0.0211047583 0.131348261 5 149259546 149260542 997 + 1.381 1.551 0.584

Help

Please Click HERE to learn more details about the results from DEXseq.