ENSG00000175711

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000570947 ENSG00000175711 No_inf pgKDN_inf B3GNTL1 protein_coding protein_coding_CDS_not_defined 13.55115 11.7265 10.02991 1.54885 0.8640758 -0.2252554 0.7226610 1.123535 0.0000000 1.12353523 0.00000000 -6.8246854 0.04579167 0.082825 0.00000 -0.082825 0.85871950 0.04246459   FALSE
ENST00000571218 ENSG00000175711 No_inf pgKDN_inf B3GNTL1 protein_coding nonsense_mediated_decay 13.55115 11.7265 10.02991 1.54885 0.8640758 -0.2252554 0.7471291 0.000000 1.0620572 0.00000000 1.06205716 6.7442380 0.05093333 0.000000 0.08605 0.086050 0.83366668 0.04246459   FALSE
ENST00000571301 ENSG00000175711 No_inf pgKDN_inf B3GNTL1 protein_coding retained_intron 13.55115 11.7265 10.02991 1.54885 0.8640758 -0.2252554 1.4706916 2.273533 0.6225412 0.04128762 0.08963819 -1.8520362 0.11601667 0.204225 0.06395 -0.140275 0.20726069 0.04246459 TRUE TRUE
ENST00000571954 ENSG00000175711 No_inf pgKDN_inf B3GNTL1 protein_coding protein_coding_CDS_not_defined 13.55115 11.7265 10.02991 1.54885 0.8640758 -0.2252554 0.6995590 2.098677 0.0000000 0.71823641 0.00000000 -7.7201944 0.05686667 0.170600 0.00000 -0.170600 0.04246459 0.04246459 FALSE TRUE
ENST00000573363 ENSG00000175711 No_inf pgKDN_inf B3GNTL1 protein_coding retained_intron 13.55115 11.7265 10.02991 1.54885 0.8640758 -0.2252554 1.5968168 1.429410 0.0000000 1.42940954 0.00000000 -7.1693333 0.08871667 0.094450 0.00000 -0.094450 0.85493862 0.04246459   FALSE
MSTRG.13569.10 ENSG00000175711 No_inf pgKDN_inf B3GNTL1 protein_coding   13.55115 11.7265 10.02991 1.54885 0.8640758 -0.2252554 1.7136594 1.257164 0.7227653 0.77327217 0.46973220 -0.7901799 0.11842500 0.118850 0.07435 -0.044500 1.00000000 0.04246459 FALSE TRUE
MSTRG.13569.13 ENSG00000175711 No_inf pgKDN_inf B3GNTL1 protein_coding   13.55115 11.7265 10.02991 1.54885 0.8640758 -0.2252554 2.7788340 1.249919 3.2486749 0.07082003 0.23540127 1.3709541 0.21615000 0.112825 0.33135 0.218525 0.09418942 0.04246459 FALSE TRUE
MSTRG.13569.4 ENSG00000175711 No_inf pgKDN_inf B3GNTL1 protein_coding   13.55115 11.7265 10.02991 1.54885 0.8640758 -0.2252554 3.0962943 1.512223 3.8702382 0.58047232 0.55890063 1.3499657 0.25004167 0.142000 0.39370 0.251700 0.38272373 0.04246459 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000175711 E001 0.0000000       17 82942149 82942154 6 -      
ENSG00000175711 E002 0.0000000       17 82942155 82942464 310 -      
ENSG00000175711 E003 0.0000000       17 82942465 82942662 198 -      
ENSG00000175711 E004 0.0000000       17 82942663 82942682 20 -      
ENSG00000175711 E005 0.0000000       17 82942683 82943790 1108 -      
ENSG00000175711 E006 0.0000000       17 82943791 82943795 5 -      
ENSG00000175711 E007 0.0000000       17 82943796 82943821 26 -      
ENSG00000175711 E008 0.0000000       17 82943822 82944049 228 -      
ENSG00000175711 E009 1.2139608 0.0116582075 4.693807e-01 7.374308e-01 17 82946879 82946893 15 - 0.401 0.290 -0.675
ENSG00000175711 E010 3.2666332 0.0092970059 5.978671e-02 2.452682e-01 17 82946894 82946959 66 - 0.744 0.496 -1.090
ENSG00000175711 E011 3.1428979 0.0054269315 3.260091e-02 1.711239e-01 17 82946960 82946983 24 - 0.744 0.462 -1.260
ENSG00000175711 E012 24.0482375 0.0006545652 2.908781e-21 8.764370e-19 17 82946984 82949948 2965 - 1.015 1.577 1.977
ENSG00000175711 E013 0.9816556 0.0135047488 9.344822e-01 9.810672e-01 17 82950026 82950149 124 - 0.303 0.290 -0.090
ENSG00000175711 E014 4.6246225 0.1196811006 3.446958e-01 6.358228e-01 17 82956695 82956769 75 - 0.833 0.659 -0.708
ENSG00000175711 E015 0.0000000       17 82956770 82956801 32 -      
ENSG00000175711 E016 2.8135097 0.0100865995 7.279355e-01 8.914123e-01 17 82957181 82957249 69 - 0.605 0.558 -0.215
ENSG00000175711 E017 3.5376285 0.0043171807 4.719210e-01 7.391916e-01 17 82957359 82957494 136 - 0.702 0.611 -0.389
ENSG00000175711 E018 0.3813786 0.0196184448 1.146773e-01   17 82960359 82960375 17 - 0.000 0.233 12.081
ENSG00000175711 E019 0.3812526 0.0165804429 1.142466e-01   17 82960376 82960486 111 - 0.000 0.233 12.084
ENSG00000175711 E020 3.9017279 0.0039444264 3.783077e-01 6.652936e-01 17 82961057 82961181 125 - 0.744 0.636 -0.452
ENSG00000175711 E021 0.1265070 0.0123608120 5.696256e-01   17 82961182 82961332 151 - 0.000 0.092 10.696
ENSG00000175711 E022 4.0384370 0.0488594147 7.681899e-01 9.103050e-01 17 82965651 82965746 96 - 0.724 0.681 -0.178
ENSG00000175711 E023 4.9228798 0.0125800734 6.582997e-01 8.571648e-01 17 83005115 83005210 96 - 0.744 0.794 0.200
ENSG00000175711 E024 0.0000000       17 83005575 83005671 97 -      
ENSG00000175711 E025 0.9606659 0.0127273500 1.291824e-01 3.813115e-01 17 83005981 83006988 1008 - 0.401 0.169 -1.675
ENSG00000175711 E026 0.1176306 0.0118524679 5.071469e-01   17 83011428 83011481 54 - 0.098 0.000 -11.906
ENSG00000175711 E027 0.7100089 0.0192835714 7.842167e-03 6.822297e-02 17 83011482 83011503 22 - 0.401 0.000 -13.987
ENSG00000175711 E028 10.0007303 0.0016629974 4.938311e-06 1.865146e-04 17 83011504 83012606 1103 - 1.208 0.810 -1.473
ENSG00000175711 E029 5.9689792 0.0024324946 2.186353e-01 5.052433e-01 17 83014454 83014519 66 - 0.907 0.777 -0.505
ENSG00000175711 E030 0.2340080 0.2389444934 2.727260e-01   17 83030761 83030902 142 - 0.177 0.000 -12.512
ENSG00000175711 E031 5.4845735 0.0063526936 3.435685e-01 6.347854e-01 17 83035035 83035099 65 - 0.864 0.759 -0.411
ENSG00000175711 E032 6.6462424 0.0031130236 3.757560e-01 6.631189e-01 17 83048471 83048570 100 - 0.833 0.922 0.341
ENSG00000175711 E033 2.8274322 0.0056919504 6.273979e-01 8.399455e-01 17 83048669 83048706 38 - 0.547 0.611 0.289
ENSG00000175711 E034 1.5935803 0.0106613940 8.645575e-01 9.531498e-01 17 83048707 83048732 26 - 0.401 0.425 0.133
ENSG00000175711 E035 2.6631603 0.0079200931 1.573012e-01 4.238542e-01 17 83048733 83048785 53 - 0.657 0.462 -0.897
ENSG00000175711 E036 2.7840633 0.0068242342 1.085617e-01 3.457018e-01 17 83048786 83049035 250 - 0.680 0.462 -0.997
ENSG00000175711 E037 0.8524732 0.0123682550 6.499328e-01 8.525715e-01 17 83049036 83049166 131 - 0.303 0.233 -0.505
ENSG00000175711 E038 0.2459655 0.0162349852 9.633563e-01   17 83050225 83050342 118 - 0.098 0.092 -0.090
ENSG00000175711 E039 0.8414621 0.0204348917 2.254696e-01 5.133073e-01 17 83051737 83051809 73 - 0.355 0.169 -1.411

Help

Please Click HERE to learn more details about the results from DEXseq.