ENSG00000176155

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000327026 ENSG00000176155 No_inf pgKDN_inf CCDC57 protein_coding protein_coding_CDS_not_defined 52.83443 32.86312 93.53242 2.922104 25.95186 1.508712 3.134222 2.310582 2.508161 0.1425331 0.2670127 0.1178840 0.08522500 0.071875 0.037200 -0.034675 0.485406689 0.005997132 FALSE TRUE
ENST00000582040 ENSG00000176155 No_inf pgKDN_inf CCDC57 protein_coding protein_coding_CDS_not_defined 52.83443 32.86312 93.53242 2.922104 25.95186 1.508712 3.973630 3.326781 4.894012 0.6692462 0.7877298 0.5555055 0.09823333 0.102475 0.086575 -0.015900 0.822910492 0.005997132 FALSE FALSE
ENST00000583053 ENSG00000176155 No_inf pgKDN_inf CCDC57 protein_coding protein_coding 52.83443 32.86312 93.53242 2.922104 25.95186 1.508712 22.508025 0.000000 67.524076 0.0000000 25.6911417 12.7213999 0.19222500 0.000000 0.576675 0.576675 0.044608727 0.005997132   FALSE
ENST00000584717 ENSG00000176155 No_inf pgKDN_inf CCDC57 protein_coding protein_coding_CDS_not_defined 52.83443 32.86312 93.53242 2.922104 25.95186 1.508712 10.932481 16.622777 7.803784 1.2300253 1.7817625 -1.0899357 0.30608333 0.507700 0.144975 -0.362725 0.005997132 0.005997132 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000176155 E001 0.3532727 0.0158687869 0.065059341   17 82101457 82101459 3 - 0.262 0.000 -12.129
ENSG00000176155 E002 0.4702767 0.0162020921 0.025313328   17 82101460 82101469 10 - 0.323 0.000 -15.395
ENSG00000176155 E003 2.5771226 0.0054512729 0.750195029 0.90145751 17 82101470 82101495 26 - 0.576 0.529 -0.215
ENSG00000176155 E004 4.3166614 0.0033559545 0.625627632 0.83894191 17 82101496 82101522 27 - 0.688 0.744 0.233
ENSG00000176155 E005 7.3084278 0.0022272929 0.110562299 0.34896267 17 82101523 82101558 36 - 0.815 0.975 0.611
ENSG00000176155 E006 13.4013189 0.0014599014 0.006861298 0.06225728 17 82101559 82101660 102 - 1.017 1.231 0.770
ENSG00000176155 E007 9.1934168 0.0048124437 0.013040139 0.09559696 17 82101661 82101689 29 - 0.850 1.089 0.889
ENSG00000176155 E008 14.0285904 0.0010291216 0.003789502 0.04092612 17 82101690 82101751 62 - 1.029 1.253 0.804
ENSG00000176155 E009 19.4563367 0.0008056334 0.659443332 0.85789031 17 82101752 82101866 115 - 1.291 1.316 0.090
ENSG00000176155 E010 0.4900381 0.0161454678 0.815116639   17 82104795 82105113 319 - 0.191 0.156 -0.352
ENSG00000176155 E011 10.9015778 0.0336881136 0.120567378 0.36733903 17 82106270 82106587 318 - 0.968 1.132 0.599
ENSG00000176155 E012 1.8329979 0.0092082761 0.478243326 0.74427446 17 82107402 82107621 220 - 0.507 0.401 -0.545
ENSG00000176155 E013 2.0792088 0.0069290494 0.469186448 0.73719926 17 82108768 82108954 187 - 0.543 0.437 -0.522
ENSG00000176155 E014 3.8254759 0.0044687771 0.543957479 0.79061953 17 82111986 82112814 829 - 0.635 0.709 0.311
ENSG00000176155 E015 5.8109099 0.0207056605 0.309392450 0.60278603 17 82112815 82113765 951 - 0.756 0.875 0.468
ENSG00000176155 E016 2.4637105 0.0153483099 0.715541634 0.88532588 17 82127692 82127704 13 - 0.507 0.556 0.233
ENSG00000176155 E017 9.3460880 0.0113802273 0.897071352 0.96607104 17 82127705 82127908 204 - 1.005 1.014 0.030
ENSG00000176155 E018 3.6921446 0.0422392239 0.940206858 0.98303567 17 82128493 82128528 36 - 0.662 0.671 0.035
ENSG00000176155 E019 3.6641969 0.0114264629 0.332463596 0.62453734 17 82128529 82128597 69 - 0.734 0.606 -0.545
ENSG00000176155 E020 4.0052265 0.0132203651 0.032301082 0.17011293 17 82134073 82134194 122 - 0.833 0.556 -1.160
ENSG00000176155 E021 0.1187032 0.0118358060 0.423116757   17 82134195 82134343 149 - 0.106 0.000 -13.738
ENSG00000176155 E022 0.9579254 0.1190288392 0.113749929 0.35507516 17 82135112 82135394 283 - 0.425 0.156 -1.936
ENSG00000176155 E023 5.0047573 0.0311134064 0.186924786 0.46486099 17 82151560 82151773 214 - 0.867 0.690 -0.706
ENSG00000176155 E024 0.2459004 0.0162554046 0.853317145   17 82151774 82151784 11 - 0.106 0.085 -0.352
ENSG00000176155 E025 0.7424589 0.0327303759 0.603200475 0.82694935 17 82151785 82151859 75 - 0.191 0.271 0.648
ENSG00000176155 E026 7.3932907 0.0031815023 0.706164332 0.88067710 17 82151860 82152460 601 - 0.898 0.934 0.133
ENSG00000176155 E027 30.9080150 0.0043518937 0.243366156 0.53334865 17 82153610 82155916 2307 - 1.537 1.468 -0.237
ENSG00000176155 E028 5.4868320 0.0029163349 0.126390701 0.37686914 17 82155917 82156283 367 - 0.898 0.727 -0.674
ENSG00000176155 E029 6.0585188 0.0025891252 0.295957925 0.58901088 17 82156284 82156736 453 - 0.777 0.887 0.432
ENSG00000176155 E030 4.1940206 0.0040475970 0.735685038 0.89515827 17 82156737 82157032 296 - 0.688 0.727 0.162
ENSG00000176155 E031 6.0065221 0.0027169393 0.496780395 0.75767035 17 82157033 82157447 415 - 0.883 0.807 -0.293
ENSG00000176155 E032 4.0548197 0.0638865259 0.994027514 1.00000000 17 82157448 82157747 300 - 0.712 0.690 -0.089
ENSG00000176155 E033 4.5313989 0.0123053408 0.401052979 0.68426786 17 82157748 82157948 201 - 0.796 0.690 -0.430
ENSG00000176155 E034 1.3262160 0.0155418742 0.058895119 0.24336076 17 82163200 82163216 17 - 0.507 0.217 -1.767
ENSG00000176155 E035 2.9129051 0.0499188092 0.108316856 0.34520837 17 82163217 82163357 141 - 0.712 0.470 -1.089
ENSG00000176155 E036 0.0000000       17 82163358 82163390 33 -      
ENSG00000176155 E037 1.7152688 0.0085906777 0.662618588 0.85936784 17 82171701 82171748 48 - 0.468 0.401 -0.352
ENSG00000176155 E038 3.5008011 0.0043616953 0.007459025 0.06595001 17 82171749 82171853 105 - 0.815 0.470 -1.504
ENSG00000176155 E039 6.5789789 0.0118225139 0.113997489 0.35554371 17 82172638 82172860 223 - 0.968 0.792 -0.674
ENSG00000176155 E040 0.0000000       17 82175566 82175578 13 -      
ENSG00000176155 E041 0.2346346 0.0155848636 0.171677865   17 82175579 82175690 112 - 0.191 0.000 -14.597
ENSG00000176155 E042 1.1069979 0.0105144518 0.984256302 0.99872794 17 82178474 82178480 7 - 0.323 0.319 -0.030
ENSG00000176155 E043 3.3933650 0.0138479501 0.039755665 0.19322177 17 82178481 82178605 125 - 0.777 0.501 -1.200
ENSG00000176155 E044 1.7260000 0.2996990035 0.723471390 0.88893282 17 82179027 82179189 163 - 0.425 0.437 0.064
ENSG00000176155 E045 0.1265070 0.0124314694 0.681011946   17 82181558 82181624 67 - 0.000 0.085 12.264
ENSG00000176155 E046 3.5548728 0.0310249153 0.676765755 0.86599578 17 82183774 82183932 159 - 0.688 0.628 -0.252
ENSG00000176155 E047 0.1271363 0.0123549501 0.681152366   17 82184958 82185172 215 - 0.000 0.085 12.264
ENSG00000176155 E048 0.0000000       17 82188190 82188218 29 -      
ENSG00000176155 E049 0.7336814 0.0297762147 0.772773225 0.91254403 17 82188219 82188223 5 - 0.262 0.217 -0.352
ENSG00000176155 E050 1.3583810 0.0127195212 0.610770428 0.83068427 17 82188224 82188267 44 - 0.323 0.401 0.455
ENSG00000176155 E051 1.0051969 0.0529123967 0.066458944 0.25968244 17 82188268 82188275 8 - 0.106 0.401 2.455
ENSG00000176155 E052 2.8301620 0.0414346036 0.972832977 0.99491389 17 82188276 82188349 74 - 0.576 0.582 0.026
ENSG00000176155 E053 3.2777761 0.0347748461 0.071106655 0.27022554 17 82188350 82188419 70 - 0.756 0.501 -1.118
ENSG00000176155 E054 0.6094966 0.0198498039 0.480913989 0.74612706 17 82190434 82190450 17 - 0.262 0.156 -0.937
ENSG00000176155 E055 3.9059402 0.0090722230 0.321019110 0.61404488 17 82193756 82193830 75 - 0.756 0.628 -0.533
ENSG00000176155 E056 5.0664409 0.0053952969 0.334895266 0.62672593 17 82193831 82193981 151 - 0.712 0.822 0.442
ENSG00000176155 E057 6.1394462 0.0516835658 0.809138563 0.92956055 17 82193982 82194139 158 - 0.867 0.836 -0.120
ENSG00000176155 E058 0.4999558 0.0156530145 0.447041143 0.72120837 17 82194140 82194255 116 - 0.106 0.217 1.233
ENSG00000176155 E059 5.6494838 0.0027968392 0.831690787 0.93924392 17 82195263 82195364 102 - 0.833 0.807 -0.100
ENSG00000176155 E060 2.2469142 0.0903801498 0.104391795 0.33770796 17 82195365 82195488 124 - 0.323 0.606 1.455
ENSG00000176155 E061 2.5105338 0.0163687912 0.006561050 0.06024237 17 82195489 82195611 123 - 0.262 0.671 2.150
ENSG00000176155 E062 1.3873949 0.0096175382 0.011352903 0.08743503 17 82196706 82196798 93 - 0.106 0.501 2.970
ENSG00000176155 E063 0.5085150 0.0157687881 0.076818476 0.28340705 17 82196892 82196957 66 - 0.000 0.271 14.002
ENSG00000176155 E064 0.9831325 0.1296762928 0.765901442 0.90905363 17 82196958 82197096 139 - 0.324 0.271 -0.353
ENSG00000176155 E065 0.2451451 0.0163891893 0.853874932   17 82197097 82197109 13 - 0.106 0.085 -0.352
ENSG00000176155 E066 1.5883196 0.0088346244 0.487056452 0.75071167 17 82198314 82198336 23 - 0.468 0.362 -0.574
ENSG00000176155 E067 2.0612352 0.0070651538 0.091253409 0.31378141 17 82198337 82198422 86 - 0.607 0.362 -1.227
ENSG00000176155 E068 2.0884024 0.0071016298 0.807601844 0.92900222 17 82201538 82201671 134 - 0.507 0.470 -0.182
ENSG00000176155 E069 3.6631876 0.1028915840 0.315749203 0.60854837 17 82201672 82201952 281 - 0.756 0.582 -0.741
ENSG00000176155 E070 0.0000000       17 82207563 82207730 168 -      
ENSG00000176155 E071 0.1170040 0.0117517682 0.423048765   17 82207731 82207846 116 - 0.106 0.000 -13.738
ENSG00000176155 E072 0.1271363 0.0123549501 0.681152366   17 82207847 82207859 13 - 0.000 0.085 12.264
ENSG00000176155 E073 0.6171771 0.0159516030 0.854688920 0.94873432 17 82207860 82208048 189 - 0.191 0.217 0.233
ENSG00000176155 E074 0.0000000       17 82212780 82212784 5 -      
ENSG00000176155 E075 0.2444846 0.0160946194 0.854013365   17 82212785 82212922 138 - 0.106 0.085 -0.352

Help

Please Click HERE to learn more details about the results from DEXseq.