ENSG00000177479

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000356401 ENSG00000177479 No_inf pgKDN_inf ARIH2 protein_coding protein_coding 43.46078 33.76869 63.8068 2.16908 14.9929 0.917823 1.0120427 3.036128 0.0000000 2.1953340 0.0000000 -8.2508328 0.02985833 0.089575 0.000000 -0.089575 0.41818058 0.02413061 FALSE TRUE
ENST00000430423 ENSG00000177479 No_inf pgKDN_inf ARIH2 protein_coding protein_coding 43.46078 33.76869 63.8068 2.16908 14.9929 0.917823 2.9416159 0.000000 3.5070045 0.0000000 1.1839015 8.4582034 0.08419167 0.000000 0.075975 0.075975 0.08790487 0.02413061 FALSE FALSE
ENST00000449376 ENSG00000177479 No_inf pgKDN_inf ARIH2 protein_coding protein_coding 43.46078 33.76869 63.8068 2.16908 14.9929 0.917823 6.2018589 4.003563 7.8282394 1.7216265 0.4409083 0.9656462 0.17095833 0.122025 0.150675 0.028650 0.85577635 0.02413061 FALSE TRUE
ENST00000452385 ENSG00000177479 No_inf pgKDN_inf ARIH2 protein_coding nonsense_mediated_decay 43.46078 33.76869 63.8068 2.16908 14.9929 0.917823 4.5170929 6.414237 3.9393850 0.6187388 0.2727747 -0.7018972 0.12156667 0.196150 0.070450 -0.125700 0.09338685 0.02413061 FALSE TRUE
ENST00000466850 ENSG00000177479 No_inf pgKDN_inf ARIH2 protein_coding retained_intron 43.46078 33.76869 63.8068 2.16908 14.9929 0.917823 7.3511339 6.735214 9.2337838 1.3289438 1.1889624 0.4546193 0.17623333 0.198475 0.161525 -0.036950 0.84844414 0.02413061   TRUE
ENST00000469038 ENSG00000177479 No_inf pgKDN_inf ARIH2 protein_coding retained_intron 43.46078 33.76869 63.8068 2.16908 14.9929 0.917823 1.8770172 3.885680 0.3846849 1.0545366 0.3846849 -3.3031019 0.05176667 0.110800 0.010500 -0.100300 0.02413061 0.02413061   FALSE
ENST00000490095 ENSG00000177479 No_inf pgKDN_inf ARIH2 protein_coding protein_coding_CDS_not_defined 43.46078 33.76869 63.8068 2.16908 14.9929 0.917823 3.3467837 1.794411 5.5583625 1.0625043 2.0138263 1.6257255 0.07372500 0.050250 0.095925 0.045675 0.83393180 0.02413061 FALSE FALSE
ENST00000492077 ENSG00000177479 No_inf pgKDN_inf ARIH2 protein_coding retained_intron 43.46078 33.76869 63.8068 2.16908 14.9929 0.917823 2.9435026 4.181122 2.0248981 0.3209124 1.0184746 -1.0423801 0.08012500 0.125700 0.040975 -0.084725 0.33049731 0.02413061 FALSE FALSE
ENST00000495507 ENSG00000177479 No_inf pgKDN_inf ARIH2 protein_coding protein_coding_CDS_not_defined 43.46078 33.76869 63.8068 2.16908 14.9929 0.917823 8.6515282 0.000000 25.9545845 0.0000000 14.9853007 11.3423294 0.09688333 0.000000 0.290650 0.290650 0.79373779 0.02413061   FALSE
ENST00000498314 ENSG00000177479 No_inf pgKDN_inf ARIH2 protein_coding protein_coding_CDS_not_defined 43.46078 33.76869 63.8068 2.16908 14.9929 0.917823 0.7520921 0.000000 1.9829199 0.0000000 1.9829199 7.6387399 0.02136667 0.000000 0.054100 0.054100 0.94912578 0.02413061 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000177479 E001 0.0000000       3 48918821 48918822 2 +      
ENSG00000177479 E002 0.0000000       3 48918823 48918825 3 +      
ENSG00000177479 E003 0.0000000       3 48918826 48918828 3 +      
ENSG00000177479 E004 0.1268540 0.0123212633 5.814740e-01   3 48918829 48918831 3 + 0.000 0.092 10.673
ENSG00000177479 E005 0.2533610 0.0159888966 2.703374e-01   3 48918832 48918835 4 + 0.000 0.167 13.772
ENSG00000177479 E006 0.2533610 0.0159888966 2.703374e-01   3 48918836 48918838 3 + 0.000 0.167 13.772
ENSG00000177479 E007 0.3719991 0.0164902343 6.334615e-01   3 48918839 48918841 3 + 0.099 0.167 0.886
ENSG00000177479 E008 0.3719991 0.0164902343 6.334615e-01   3 48918842 48918843 2 + 0.099 0.167 0.886
ENSG00000177479 E009 0.6092753 0.3608955117 7.891838e-01 9.191069e-01 3 48918844 48918847 4 + 0.247 0.167 -0.701
ENSG00000177479 E010 1.3175850 0.0103389786 2.180267e-02 1.340200e-01 3 48918848 48918852 5 + 0.517 0.167 -2.284
ENSG00000177479 E011 2.4067349 0.0514473806 2.830814e-02 1.573991e-01 3 48918853 48918855 3 + 0.683 0.338 -1.699
ENSG00000177479 E012 2.4067349 0.0514473806 2.830814e-02 1.573991e-01 3 48918856 48918856 1 + 0.683 0.338 -1.699
ENSG00000177479 E013 2.6508752 0.0126851389 2.245680e-02 1.362566e-01 3 48918857 48918863 7 + 0.705 0.382 -1.529
ENSG00000177479 E014 5.6136267 0.0196365370 4.314940e-01 7.092229e-01 3 48918864 48918894 31 + 0.867 0.774 -0.366
ENSG00000177479 E015 9.5151035 0.0016073397 2.124588e-01 4.976872e-01 3 48918895 48918998 104 + 1.077 0.965 -0.411
ENSG00000177479 E016 0.1187032 0.0118079240 4.975729e-01   3 48921480 48921576 97 + 0.099 0.000 -13.834
ENSG00000177479 E017 0.1265070 0.0122518572 5.816131e-01   3 48922349 48922468 120 + 0.000 0.092 12.833
ENSG00000177479 E018 2.7858844 0.0051708318 1.012266e-01 3.322516e-01 3 48922748 48922760 13 + 0.683 0.460 -1.021
ENSG00000177479 E019 2.9018159 0.0050837382 6.910394e-02 2.656109e-01 3 48922761 48922764 4 + 0.705 0.460 -1.114
ENSG00000177479 E020 6.8232739 0.0020752951 1.754119e-01 4.494294e-01 3 48922765 48922811 47 + 0.961 0.823 -0.529
ENSG00000177479 E021 0.1176306 0.0117216931 4.975204e-01   3 48924716 48924717 2 + 0.099 0.000 -13.835
ENSG00000177479 E022 8.4621655 0.0022810103 9.734615e-01 9.952702e-01 3 48924718 48924839 122 + 0.973 0.976 0.011
ENSG00000177479 E023 1.6147236 0.0177111756 2.166705e-01 5.028271e-01 3 48924840 48924971 132 + 0.305 0.494 1.056
ENSG00000177479 E024 1.8450826 0.1173503296 5.815284e-01 8.135291e-01 3 48924972 48925217 246 + 0.402 0.494 0.472
ENSG00000177479 E025 21.0711891 0.0056682673 4.227981e-04 7.659789e-03 3 48926718 48927461 744 + 1.191 1.441 0.873
ENSG00000177479 E026 39.1833082 0.0003960267 3.410248e-01 6.326443e-01 3 48927462 48927778 317 + 1.626 1.582 -0.150
ENSG00000177479 E027 14.7564997 0.0067280443 9.360075e-02 3.181393e-01 3 48927779 48927813 35 + 1.263 1.129 -0.474
ENSG00000177479 E028 5.6528723 0.0024381127 7.488477e-01 9.009297e-01 3 48927814 48927956 143 + 0.803 0.838 0.137
ENSG00000177479 E029 0.3722815 0.0165511884 6.337020e-01   3 48943186 48943533 348 + 0.099 0.167 0.886
ENSG00000177479 E030 0.3726934 0.0166074420 6.331929e-01   3 48944982 48945135 154 + 0.099 0.167 0.886
ENSG00000177479 E031 2.9297358 0.0049252202 5.521635e-01 7.957351e-01 3 48945136 48945181 46 + 0.635 0.555 -0.355
ENSG00000177479 E032 0.2357071 0.0156476040 2.165779e-01   3 48949066 48949096 31 + 0.179 0.000 -14.763
ENSG00000177479 E033 11.5935516 0.0161488153 2.479865e-01 5.387854e-01 3 48961612 48961679 68 + 1.154 1.046 -0.389
ENSG00000177479 E034 0.0000000       3 48964918 48964918 1 +      
ENSG00000177479 E035 10.5896786 0.0028920237 8.308335e-02 2.970512e-01 3 48964919 48964982 64 + 1.138 0.987 -0.549
ENSG00000177479 E036 0.0000000       3 48964983 48964984 2 +      
ENSG00000177479 E037 16.7797616 0.0064963272 1.298487e-02 9.528248e-02 3 48967125 48967205 81 + 1.340 1.152 -0.664
ENSG00000177479 E038 14.8918297 0.0010133083 1.277887e-01 3.789974e-01 3 48967206 48967275 70 + 1.257 1.144 -0.399
ENSG00000177479 E039 0.0000000       3 48967276 48967283 8 +      
ENSG00000177479 E040 0.1265070 0.0122518572 5.816131e-01   3 48968061 48968177 117 + 0.000 0.092 12.833
ENSG00000177479 E041 0.3729107 0.1553520421 6.653256e-01   3 48968334 48968533 200 + 0.099 0.167 0.886
ENSG00000177479 E042 4.6763506 0.0031902218 6.867503e-01 8.706909e-01 3 48968534 48968536 3 + 0.727 0.774 0.191
ENSG00000177479 E043 14.5337522 0.0023770880 2.937116e-01 5.872032e-01 3 48968537 48968655 119 + 1.232 1.152 -0.284
ENSG00000177479 E044 15.2293690 0.0008797180 4.921294e-02 2.187269e-01 3 48970595 48970704 110 + 1.281 1.137 -0.509
ENSG00000177479 E045 0.2357071 0.0156476040 2.165779e-01   3 48970705 48970841 137 + 0.179 0.000 -14.763
ENSG00000177479 E046 0.4988833 0.0157333640 3.583555e-01   3 48973615 48973698 84 + 0.099 0.232 1.471
ENSG00000177479 E047 20.9583462 0.0279649850 7.745616e-01 9.133766e-01 3 48973699 48973816 118 + 1.350 1.332 -0.063
ENSG00000177479 E048 0.3809703 0.0342704586 1.215198e-01   3 48974665 48974816 152 + 0.000 0.232 14.259
ENSG00000177479 E049 13.1848208 0.0014344031 2.170813e-01 5.033127e-01 3 48974817 48974867 51 + 1.095 1.193 0.348
ENSG00000177479 E050 0.0000000       3 48974868 48974868 1 +      
ENSG00000177479 E051 10.1484285 0.0017614432 2.154341e-02 1.329735e-01 3 48974958 48974979 22 + 0.923 1.129 0.756
ENSG00000177479 E052 1.5142161 0.0717490301 6.168598e-03 5.760174e-02 3 48974980 48975111 132 + 0.099 0.555 3.345
ENSG00000177479 E053 24.4119228 0.0005994897 4.201262e-02 1.994331e-01 3 48979482 48979633 152 + 1.335 1.455 0.416
ENSG00000177479 E054 31.1982451 0.0007149742 2.807879e-01 5.739317e-01 3 48980353 48980496 144 + 1.536 1.480 -0.193
ENSG00000177479 E055 20.9828018 0.0007044499 5.702679e-02 2.386841e-01 3 48981660 48981728 69 + 1.401 1.281 -0.417
ENSG00000177479 E056 1.3712814 0.0097676048 1.638171e-01 4.328008e-01 3 48982710 48982895 186 + 0.246 0.460 1.301
ENSG00000177479 E057 22.0397227 0.0006853746 5.936847e-01 8.210835e-01 3 48982896 48982979 84 + 1.379 1.346 -0.114
ENSG00000177479 E058 139.6908182 0.0002090996 1.350092e-06 6.042811e-05 3 48983199 48986382 3184 + 2.085 2.194 0.363

Help

Please Click HERE to learn more details about the results from DEXseq.