ENSG00000178802

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000323744 ENSG00000178802 No_inf pgKDN_inf MPI protein_coding protein_coding 21.59708 22.04186 20.81897 1.133822 1.137883 -0.08230885 0.7737643 0.000000 2.3212930 0.0000000 0.8619013 7.86498656 0.03624167 0.000000 0.108725 0.108725 0.03010185 0.03010185 FALSE TRUE
ENST00000352410 ENSG00000178802 No_inf pgKDN_inf MPI protein_coding protein_coding 21.59708 22.04186 20.81897 1.133822 1.137883 -0.08230885 2.4338690 4.735516 1.4360632 0.4527590 0.5661103 -1.71443443 0.11504167 0.219125 0.073750 -0.145375 0.32768842 0.03010185 FALSE TRUE
ENST00000561470 ENSG00000178802 No_inf pgKDN_inf MPI protein_coding nonsense_mediated_decay 21.59708 22.04186 20.81897 1.133822 1.137883 -0.08230885 4.2243896 4.021966 3.9008183 0.7728039 0.5751427 -0.04401286 0.19645833 0.183800 0.188475 0.004675 0.99903044 0.03010185 FALSE TRUE
ENST00000563422 ENSG00000178802 No_inf pgKDN_inf MPI protein_coding protein_coding 21.59708 22.04186 20.81897 1.133822 1.137883 -0.08230885 1.1526914 1.844082 1.0588674 0.6161904 0.6197526 -0.79462201 0.05242500 0.081950 0.050450 -0.031500 0.83366668 0.03010185 FALSE TRUE
ENST00000565576 ENSG00000178802 No_inf pgKDN_inf MPI protein_coding protein_coding 21.59708 22.04186 20.81897 1.133822 1.137883 -0.08230885 1.6283294 1.238188 2.0813775 0.3257954 0.3956488 0.74461775 0.07636667 0.058400 0.099775 0.041375 0.78089100 0.03010185 FALSE TRUE
ENST00000566556 ENSG00000178802 No_inf pgKDN_inf MPI protein_coding retained_intron 21.59708 22.04186 20.81897 1.133822 1.137883 -0.08230885 1.5925159 1.658547 1.4331945 0.1696767 0.2401245 -0.20932657 0.07407500 0.076225 0.069075 -0.007150 0.96172354 0.03010185 FALSE FALSE
ENST00000567116 ENSG00000178802 No_inf pgKDN_inf MPI protein_coding retained_intron 21.59708 22.04186 20.81897 1.133822 1.137883 -0.08230885 1.0784117 1.766892 0.2974755 0.6543402 0.2974755 -2.53081285 0.04942500 0.078575 0.016575 -0.062000 0.44145315 0.03010185 FALSE TRUE
ENST00000568907 ENSG00000178802 No_inf pgKDN_inf MPI protein_coding protein_coding 21.59708 22.04186 20.81897 1.133822 1.137883 -0.08230885 1.4862609 0.000000 1.8581169 0.0000000 1.8581169 7.54544094 0.06603333 0.000000 0.080800 0.080800 0.83895848 0.03010185 FALSE FALSE
ENST00000569931 ENSG00000178802 No_inf pgKDN_inf MPI protein_coding protein_coding 21.59708 22.04186 20.81897 1.133822 1.137883 -0.08230885 4.0609214 4.439284 4.7185952 1.6377498 0.9238124 0.08783839 0.18880000 0.197025 0.230775 0.033750 0.89334169 0.03010185 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000178802 E001 0.7338622 0.2980573976 0.89792347 0.96629818 15 74890005 74890038 34 + 0.264 0.216 -0.378
ENSG00000178802 E002 0.6063816 0.0156504890 0.46488174 0.73424306 15 74890039 74890041 3 + 0.264 0.155 -0.964
ENSG00000178802 E003 0.6063816 0.0156504890 0.46488174 0.73424306 15 74890042 74890042 1 + 0.264 0.155 -0.964
ENSG00000178802 E004 0.6063816 0.0156504890 0.46488174 0.73424306 15 74890043 74890045 3 + 0.264 0.155 -0.964
ENSG00000178802 E005 1.1040089 0.0117447678 0.95697159 0.98975055 15 74890046 74890051 6 + 0.326 0.317 -0.057
ENSG00000178802 E006 1.1040089 0.0117447678 0.95697159 0.98975055 15 74890052 74890052 1 + 0.326 0.317 -0.057
ENSG00000178802 E007 1.9763722 0.0070379152 0.62882326 0.84080856 15 74890053 74890061 9 + 0.427 0.498 0.358
ENSG00000178802 E008 3.4542356 0.0039873321 0.65136969 0.85314907 15 74890062 74890071 10 + 0.610 0.667 0.249
ENSG00000178802 E009 4.4417141 0.0031227448 0.57364969 0.80897915 15 74890072 74890076 5 + 0.691 0.758 0.273
ENSG00000178802 E010 5.6946658 0.0023978842 0.22780966 0.51624733 15 74890077 74890089 13 + 0.738 0.872 0.528
ENSG00000178802 E011 2.2122627 0.0066836324 0.93955025 0.98281038 15 74890090 74890201 112 + 0.510 0.498 -0.057
ENSG00000178802 E012 0.5000168 0.0189947215 0.46316092 0.73320197 15 74890202 74890437 236 + 0.107 0.216 1.206
ENSG00000178802 E013 0.3719991 0.0168523183 0.75860788   15 74890438 74890526 89 + 0.107 0.155 0.621
ENSG00000178802 E014 6.2727205 0.0023425172 0.95343656 0.98854798 15 74890527 74890549 23 + 0.854 0.859 0.020
ENSG00000178802 E015 6.1454582 0.0023770211 0.94870229 0.98676200 15 74890550 74890552 3 + 0.854 0.846 -0.031
ENSG00000178802 E016 6.1470923 0.0023571193 0.94841973 0.98664599 15 74890553 74890555 3 + 0.854 0.846 -0.031
ENSG00000178802 E017 15.0080404 0.0010401196 0.86889773 0.95488787 15 74890556 74890654 99 + 1.206 1.193 -0.046
ENSG00000178802 E018 0.8687779 0.2011403094 0.47301177 0.74015718 15 74890655 74890973 319 + 0.193 0.317 0.944
ENSG00000178802 E019 0.6265888 0.0149386265 0.28008712 0.57331278 15 74890979 74891035 57 + 0.107 0.269 1.621
ENSG00000178802 E020 9.2408030 0.0382537567 0.85666343 0.94964926 15 74891379 74891414 36 + 0.997 1.010 0.047
ENSG00000178802 E021 12.6737155 0.0011735092 0.97480656 0.99541136 15 74891415 74891489 75 + 1.132 1.129 -0.013
ENSG00000178802 E022 12.5434749 0.0027984551 0.90828598 0.97085687 15 74891490 74891564 75 + 1.132 1.122 -0.038
ENSG00000178802 E023 6.8957605 0.0022925775 0.91997567 0.97510009 15 74891565 74891579 15 + 0.886 0.896 0.036
ENSG00000178802 E024 8.3710198 0.0019115626 0.88676779 0.96213985 15 74892661 74892687 27 + 0.959 0.972 0.049
ENSG00000178802 E025 14.3097272 0.0195872182 0.11295893 0.35362939 15 74892688 74892802 115 + 1.256 1.115 -0.503
ENSG00000178802 E026 1.3790540 0.0099926881 0.07731002 0.28444872 15 74892803 74893088 286 + 0.193 0.467 1.791
ENSG00000178802 E027 21.1709889 0.0007512122 0.06780542 0.26277343 15 74893138 74893320 183 + 1.403 1.289 -0.395
ENSG00000178802 E028 4.1343201 0.0035539696 0.07555582 0.28079169 15 74893321 74893786 466 + 0.818 0.603 -0.893
ENSG00000178802 E029 4.9845483 0.0047999277 0.02718778 0.15327122 15 74895434 74896151 718 + 0.902 0.647 -1.023
ENSG00000178802 E030 23.2486138 0.0117558235 0.84373005 0.94414748 15 74896152 74896325 174 + 1.373 1.384 0.037
ENSG00000178802 E031 10.4984987 0.0013428753 0.26878207 0.56238089 15 74896326 74897010 685 + 0.997 1.093 0.349
ENSG00000178802 E032 17.5229885 0.0014475861 0.31958354 0.61226743 15 74897011 74897219 209 + 1.221 1.289 0.240
ENSG00000178802 E033 4.7489829 0.0086372094 0.01316839 0.09614508 15 74897220 74897511 292 + 0.546 0.859 1.309
ENSG00000178802 E034 7.4378208 0.0028612818 0.10990820 0.34801790 15 74897512 74897538 27 + 0.818 0.982 0.621
ENSG00000178802 E035 78.0038062 0.0002648631 0.85003403 0.94685583 15 74897539 74899991 2453 + 1.895 1.889 -0.022
ENSG00000178802 E036 0.0000000       15 74899992 74900200 209 +      
ENSG00000178802 E037 0.0000000       15 74900201 74900483 283 +      
ENSG00000178802 E038 0.0000000       15 74900484 74902219 1736 +      

Help

Please Click HERE to learn more details about the results from DEXseq.