ENSG00000178927

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000342572 ENSG00000178927 No_inf pgKDN_inf CYBC1 protein_coding protein_coding 59.315 51.1662 58.17748 1.418054 2.689943 0.1852359 18.910044 14.457759 19.888524 3.1692524 2.0852219 0.4598199 0.31801667 0.278525 0.346475 0.067950 0.82027816 0.02419464 FALSE  
ENST00000536759 ENSG00000178927 No_inf pgKDN_inf CYBC1 protein_coding retained_intron 59.315 51.1662 58.17748 1.418054 2.689943 0.1852359 3.497354 5.978899 1.874363 0.9036690 0.3216261 -1.6682139 0.06330000 0.117775 0.032500 -0.085275 0.06273143 0.02419464 FALSE  
ENST00000578895 ENSG00000178927 No_inf pgKDN_inf CYBC1 protein_coding retained_intron 59.315 51.1662 58.17748 1.418054 2.689943 0.1852359 3.683095 4.767739 2.619975 0.6139124 0.2859419 -0.8612790 0.06415000 0.094350 0.044925 -0.049425 0.41678724 0.02419464 FALSE  
ENST00000578919 ENSG00000178927 No_inf pgKDN_inf CYBC1 protein_coding protein_coding 59.315 51.1662 58.17748 1.418054 2.689943 0.1852359 2.834859 0.000000 5.259547 0.0000000 2.3336125 9.0415350 0.04435833 0.000000 0.087850 0.087850 0.02419464 0.02419464 FALSE  
ENST00000585044 ENSG00000178927 No_inf pgKDN_inf CYBC1 protein_coding retained_intron 59.315 51.1662 58.17748 1.418054 2.689943 0.1852359 1.780590 3.082568 0.381438 0.2918603 0.2287302 -2.9819497 0.03164167 0.060500 0.007100 -0.053400 0.03296892 0.02419464 FALSE  
MSTRG.13529.16 ENSG00000178927 No_inf pgKDN_inf CYBC1 protein_coding   59.315 51.1662 58.17748 1.418054 2.689943 0.1852359 12.597666 4.461670 16.116136 2.6325586 1.9096257 1.8505152 0.20615000 0.091125 0.277425 0.186300 0.30672585 0.02419464 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000178927 E001 1.1334969 0.0107567980 1.634482e-02 0.1111373523 17 82440912 82441010 99 - 0.096 0.467 2.965
ENSG00000178927 E002 0.0000000       17 82441011 82441052 42 -      
ENSG00000178927 E003 0.1265070 0.0122910843 5.605276e-01   17 82442171 82442585 415 - 0.000 0.094 9.505
ENSG00000178927 E004 0.0000000       17 82442586 82442588 3 -      
ENSG00000178927 E005 0.0000000       17 82442589 82442642 54 -      
ENSG00000178927 E006 0.0000000       17 82442643 82442643 1 -      
ENSG00000178927 E007 2.7008918 0.0051748620 7.407650e-01 0.8971486014 17 82442644 82442657 14 - 0.541 0.591 0.228
ENSG00000178927 E008 6.2838061 0.0023087018 2.660068e-01 0.5594578764 17 82442658 82442675 18 - 0.793 0.917 0.479
ENSG00000178927 E009 12.8583521 0.0010863041 7.652833e-01 0.9087560430 17 82442676 82442724 49 - 1.150 1.133 -0.063
ENSG00000178927 E010 34.2576626 0.0004169404 4.889469e-01 0.7520213853 17 82442725 82442855 131 - 1.562 1.533 -0.097
ENSG00000178927 E011 21.5573254 0.0007541235 2.222344e-02 0.1355727845 17 82442856 82442899 44 - 1.420 1.282 -0.479
ENSG00000178927 E012 22.9933042 0.0007309427 3.936635e-01 0.6785506138 17 82442900 82442930 31 - 1.403 1.357 -0.158
ENSG00000178927 E013 65.8152485 0.0002385740 2.303756e-02 0.1384769082 17 82442931 82443066 136 - 1.862 1.787 -0.255
ENSG00000178927 E014 84.5910558 0.0006084093 2.766669e-04 0.0054419238 17 82443067 82443241 175 - 1.987 1.875 -0.378
ENSG00000178927 E015 80.2596383 0.0002044335 2.999108e-02 0.1629762075 17 82443242 82443455 214 - 1.942 1.878 -0.216
ENSG00000178927 E016 37.5536939 0.0004030458 3.866444e-01 0.6725271322 17 82443456 82443505 50 - 1.604 1.568 -0.120
ENSG00000178927 E017 29.3875932 0.0097576138 8.935415e-01 0.9647328893 17 82443506 82443531 26 - 1.484 1.481 -0.011
ENSG00000178927 E018 35.8030238 0.0004171356 7.144411e-01 0.8849188755 17 82443532 82443612 81 - 1.553 1.577 0.083
ENSG00000178927 E019 16.8928045 0.0008414589 6.870886e-01 0.8709268575 17 82443613 82443626 14 - 1.264 1.242 -0.077
ENSG00000178927 E020 17.9827982 0.0033137311 6.412549e-01 0.8476408255 17 82443627 82443659 33 - 1.292 1.265 -0.094
ENSG00000178927 E021 27.1385759 0.0020268394 3.527190e-01 0.6427632795 17 82443660 82443774 115 - 1.473 1.425 -0.165
ENSG00000178927 E022 8.6870214 0.0151883533 6.410677e-01 0.8476060948 17 82443775 82443822 48 - 1.007 0.965 -0.158
ENSG00000178927 E023 2.5889916 0.0661137141 6.025258e-01 0.8265496370 17 82443823 82443848 26 - 0.509 0.591 0.379
ENSG00000178927 E024 1.1077271 0.0197208131 7.877379e-01 0.9186329579 17 82443849 82443870 22 - 0.299 0.344 0.286
ENSG00000178927 E025 0.3709916 0.0165535197 6.090233e-01   17 82443871 82443889 19 - 0.096 0.171 0.965
ENSG00000178927 E026 2.0970190 0.0071325420 5.236735e-01 0.7768036515 17 82443890 82443901 12 - 0.437 0.534 0.479
ENSG00000178927 E027 2.3425761 0.0064080946 5.530334e-01 0.7963078504 17 82443902 82443908 7 - 0.475 0.563 0.424
ENSG00000178927 E028 6.8893001 0.0172838947 5.678146e-01 0.8055190317 17 82443909 82443936 28 - 0.857 0.929 0.275
ENSG00000178927 E029 9.8433674 0.0013612098 3.504912e-01 0.6407474460 17 82443937 82443954 18 - 0.986 1.075 0.327
ENSG00000178927 E030 15.8379401 0.0012389500 5.763402e-01 0.8104890816 17 82443955 82443992 38 - 1.201 1.248 0.166
ENSG00000178927 E031 12.3873613 0.0017230444 7.695748e-01 0.9109838399 17 82443993 82443996 4 - 1.110 1.140 0.107
ENSG00000178927 E032 17.5106586 0.0007486019 8.787160e-01 0.9589581398 17 82443997 82444016 20 - 1.269 1.265 -0.015
ENSG00000178927 E033 16.3690682 0.0008079563 3.597965e-01 0.6493095787 17 82444017 82444034 18 - 1.269 1.210 -0.208
ENSG00000178927 E034 29.0115858 0.0005072843 7.111836e-01 0.8832721553 17 82444035 82444124 90 - 1.484 1.470 -0.048
ENSG00000178927 E035 5.3548354 0.0434866516 8.478614e-03 0.0718776398 17 82444125 82444388 264 - 0.571 0.941 1.505
ENSG00000178927 E036 1.5052167 0.0086118275 2.023023e-02 0.1278958213 17 82444389 82444446 58 - 0.175 0.534 2.286
ENSG00000178927 E037 21.9555405 0.0006053894 6.834449e-01 0.8689902504 17 82444447 82444464 18 - 1.344 1.375 0.110
ENSG00000178927 E038 27.3279147 0.0034805837 8.694897e-01 0.9551341435 17 82444465 82444530 66 - 1.443 1.459 0.055
ENSG00000178927 E039 16.1677864 0.0009654363 9.576361e-01 0.9899023959 17 82444531 82444536 6 - 1.233 1.236 0.008
ENSG00000178927 E040 26.1054033 0.0005765199 8.484602e-01 0.9463361085 17 82444537 82444591 55 - 1.424 1.441 0.059
ENSG00000178927 E041 7.8781530 0.0026535162 1.581435e-05 0.0005049917 17 82444592 82444985 394 - 0.650 1.109 1.772
ENSG00000178927 E042 1.6516738 0.0307762861 1.147060e-04 0.0026597395 17 82444986 82445003 18 - 0.000 0.617 12.776
ENSG00000178927 E043 2.7745008 0.0290298574 1.436399e-04 0.0031920364 17 82445004 82445186 183 - 0.175 0.766 3.287
ENSG00000178927 E044 2.5182429 0.1049786965 2.494943e-03 0.0300630589 17 82445251 82445462 212 - 0.175 0.728 3.134
ENSG00000178927 E045 1.2506586 0.0778211982 8.250271e-02 0.2958971447 17 82445463 82445504 42 - 0.175 0.467 1.965
ENSG00000178927 E046 2.1313936 0.0063832979 7.578442e-03 0.0665910222 17 82445505 82445557 53 - 0.241 0.642 2.187
ENSG00000178927 E047 3.8895900 0.0036667531 1.447286e-04 0.0032069821 17 82445558 82445863 306 - 0.350 0.862 2.343
ENSG00000178927 E048 14.1793656 0.0010106422 5.615190e-01 0.8018431762 17 82445864 82445880 17 - 1.201 1.163 -0.135
ENSG00000178927 E049 24.5258073 0.0008130968 1.845300e-01 0.4616895427 17 82445881 82445956 76 - 1.443 1.371 -0.251
ENSG00000178927 E050 12.0394613 0.0225015984 1.890729e-01 0.4676873729 17 82445957 82445960 4 - 1.179 1.047 -0.475
ENSG00000178927 E051 2.5006273 0.0065880669 7.950504e-03 0.0688950016 17 82445961 82446042 82 - 0.299 0.687 1.965
ENSG00000178927 E052 2.9912285 0.0913625180 5.141280e-02 0.2247263321 17 82446043 82446153 111 - 0.396 0.728 1.549
ENSG00000178927 E053 2.2421602 0.1469371576 1.441888e-01 0.4043511988 17 82446154 82446202 49 - 0.350 0.617 1.341
ENSG00000178927 E054 20.4575529 0.0009330567 3.628251e-02 0.1830210585 17 82446623 82446692 70 - 1.394 1.265 -0.450
ENSG00000178927 E055 8.0166719 0.0205708190 6.301252e-02 0.2524901531 17 82446693 82446696 4 - 1.048 0.848 -0.749
ENSG00000178927 E056 13.7781560 0.0010727815 2.110398e-04 0.0043710517 17 82446697 82447579 883 - 0.986 1.287 1.083
ENSG00000178927 E057 12.9053352 0.0015082911 5.290204e-02 0.2286206506 17 82447580 82447621 42 - 1.214 1.066 -0.530
ENSG00000178927 E058 2.4590420 0.0060997107 7.237099e-01 0.8890319214 17 82447622 82447646 25 - 0.509 0.563 0.254
ENSG00000178927 E059 5.4270187 0.0026277170 2.869707e-01 0.5803694810 17 82447647 82447850 204 - 0.737 0.863 0.495
ENSG00000178927 E060 6.4773436 0.0022077099 1.286229e-03 0.0181695855 17 82447851 82447927 77 - 0.650 1.008 1.405
ENSG00000178927 E061 10.6025921 0.0656629268 2.534872e-03 0.0304421724 17 82447928 82448809 882 - 0.793 1.217 1.573
ENSG00000178927 E062 6.2732761 0.0720614916 6.149900e-04 0.0102356332 17 82448810 82449169 360 - 0.509 1.038 2.152
ENSG00000178927 E063 8.3973536 0.0041942728 1.477375e-01 0.4091226955 17 82449170 82449173 4 - 1.038 0.904 -0.499
ENSG00000178927 E064 15.8052666 0.0009141085 2.027444e-02 0.1280314135 17 82449174 82449292 119 - 1.303 1.140 -0.574
ENSG00000178927 E065 2.1327782 0.0066094688 7.604985e-03 0.0667481335 17 82449293 82449430 138 - 0.241 0.642 2.187
ENSG00000178927 E066 3.5340087 0.1240876183 6.608431e-01 0.8584713867 17 82449431 82449480 50 - 0.696 0.617 -0.333
ENSG00000178927 E067 9.1634488 0.0023508229 1.775710e-02 0.1172474797 17 82449481 82449754 274 - 0.872 1.101 0.849
ENSG00000178927 E068 3.8406230 0.0037965304 6.190569e-02 0.2500053712 17 82449755 82449778 24 - 0.541 0.784 1.035
ENSG00000178927 E069 5.2137558 0.0026424695 1.888204e-02 0.1222109423 17 82449779 82449900 122 - 0.625 0.904 1.122
ENSG00000178927 E070 1.6077090 0.0115647969 4.529881e-01 0.7258639664 17 82449901 82449956 56 - 0.350 0.468 0.643
ENSG00000178927 E071 4.0973468 0.0183114820 8.889969e-02 0.3093764220 17 82449957 82450198 242 - 0.571 0.801 0.964
ENSG00000178927 E072 2.2243193 0.0063239651 3.945324e-01 0.6793418604 17 82450199 82450254 56 - 0.437 0.563 0.617
ENSG00000178927 E073 2.4682074 0.0058485654 4.239700e-01 0.7031787311 17 82450255 82450278 24 - 0.475 0.591 0.550
ENSG00000178927 E074 5.4097421 0.0026630571 6.414302e-01 0.8477408834 17 82450279 82450479 201 - 0.775 0.833 0.228
ENSG00000178927 E075 1.6156363 0.0082941538 1.878486e-01 0.4660912652 17 82450480 82450532 53 - 0.299 0.502 1.134
ENSG00000178927 E076 2.3650239 0.1943697692 1.592167e-01 0.4265657540 17 82450533 82450699 167 - 0.350 0.642 1.451
ENSG00000178927 E077 3.6504527 0.0063044302 4.130889e-01 0.6940016438 17 82450700 82450829 130 - 0.717 0.617 -0.422

Help

Please Click HERE to learn more details about the results from DEXseq.