ENSG00000179115

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000314606 ENSG00000179115 No_inf pgKDN_inf FARSA protein_coding protein_coding 51.22003 32.29805 57.28793 1.056717 1.190832 0.8265894 46.424535 29.84985 51.180753 1.42979 1.284346 0.7776765 0.90875833 0.923425 0.893225 -0.030200 0.66395680 0.01841273 FALSE  
ENST00000588025 ENSG00000179115 No_inf pgKDN_inf FARSA protein_coding protein_coding 51.22003 32.29805 57.28793 1.056717 1.190832 0.8265894 2.052139 0.30503 5.421313 0.30503 0.618999 4.1077399 0.03659167 0.008675 0.094550 0.085875 0.01841273 0.01841273 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000179115 E001 0.4797798 0.0157855151 0.611692106   19 12922479 12922479 1 - 0.197 0.118 -0.870
ENSG00000179115 E002 5.2233685 0.0030614757 0.828754226 0.93806859 19 12922480 12922529 50 - 0.776 0.801 0.102
ENSG00000179115 E003 6.0849666 0.0031931672 0.559284572 0.80050133 19 12922530 12922539 10 - 0.816 0.880 0.249
ENSG00000179115 E004 6.2036047 0.0037236905 0.638463462 0.84600369 19 12922540 12922544 5 - 0.828 0.880 0.200
ENSG00000179115 E005 27.4710093 0.0005852186 0.015400140 0.10703155 19 12922545 12922648 104 - 1.386 1.522 0.471
ENSG00000179115 E006 77.7327334 0.0002102019 0.006178225 0.05765044 19 12922649 12922886 238 - 1.848 1.939 0.305
ENSG00000179115 E007 47.0348022 0.0059287336 0.651775143 0.85334772 19 12924151 12924265 115 - 1.662 1.687 0.087
ENSG00000179115 E008 36.1144046 0.0006771893 0.335164076 0.62701142 19 12924449 12924526 78 - 1.578 1.531 -0.163
ENSG00000179115 E009 26.0493602 0.0005364886 0.352756463 0.64277736 19 12924639 12924680 42 - 1.443 1.390 -0.185
ENSG00000179115 E010 51.2886213 0.0003125289 0.444329688 0.71897433 19 12924681 12924807 127 - 1.721 1.690 -0.104
ENSG00000179115 E011 0.4884040 0.0158156872 0.625373705   19 12924808 12924903 96 - 0.141 0.211 0.715
ENSG00000179115 E012 43.1722312 0.0055942178 0.645952211 0.85021097 19 12924904 12925003 100 - 1.645 1.621 -0.083
ENSG00000179115 E013 27.1078362 0.0005316203 0.211095800 0.49591606 19 12925090 12925174 85 - 1.466 1.395 -0.246
ENSG00000179115 E014 22.2038458 0.0142054396 0.863824275 0.95287843 19 12928342 12928397 56 - 1.361 1.349 -0.043
ENSG00000179115 E015 17.3644853 0.0207670068 0.935920717 0.98167927 19 12928398 12928409 12 - 1.251 1.261 0.037
ENSG00000179115 E016 24.3117055 0.0005807885 0.542298616 0.78962052 19 12928410 12928457 48 - 1.379 1.416 0.130
ENSG00000179115 E017 0.4982540 0.0153659975 0.137521347   19 12928458 12928534 77 - 0.076 0.288 2.300
ENSG00000179115 E018 22.9222257 0.0006122463 0.686158308 0.87035520 19 12928535 12928572 38 - 1.379 1.355 -0.083
ENSG00000179115 E019 38.7643252 0.0004192048 0.325736946 0.61824870 19 12928573 12928663 91 - 1.608 1.562 -0.158
ENSG00000179115 E020 37.0693894 0.0003833773 0.334382479 0.62619582 19 12928755 12928847 93 - 1.589 1.542 -0.159
ENSG00000179115 E021 36.8880469 0.0040550319 0.184102559 0.46120988 19 12930223 12930306 84 - 1.539 1.611 0.244
ENSG00000179115 E022 20.1333701 0.0007050647 0.755283672 0.90358940 19 12930307 12930341 35 - 1.323 1.304 -0.068
ENSG00000179115 E023 0.3802150 0.0471141214 0.040081603   19 12930342 12930428 87 - 0.000 0.288 11.569
ENSG00000179115 E024 16.8288333 0.0008785168 0.315175508 0.60803064 19 12930429 12930527 99 - 1.269 1.197 -0.254
ENSG00000179115 E025 0.1268540 0.0124293226 0.320783423   19 12930528 12930611 84 - 0.000 0.118 9.984
ENSG00000179115 E026 17.8141278 0.0008061184 0.523556196 0.77675239 19 12930612 12930749 138 - 1.282 1.238 -0.154
ENSG00000179115 E027 20.9097522 0.0048495643 0.084284194 0.29978856 19 12933550 12933681 132 - 1.375 1.254 -0.425
ENSG00000179115 E028 3.2674532 0.0052451364 0.624044405 0.83824494 19 12933682 12933714 33 - 0.647 0.582 -0.285
ENSG00000179115 E029 0.0000000       19 12933762 12934037 276 -      

Help

Please Click HERE to learn more details about the results from DEXseq.