ENSG00000179832

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000326134 ENSG00000179832 No_inf pgKDN_inf MROH1 protein_coding protein_coding 24.78849 28.06041 20.505 1.924254 0.5720796 -0.452371 2.482135 2.9732240 1.052811 0.6187707 0.6649640 -1.4889872 0.09853333 0.11040 0.052375 -0.058025 0.60800511 0.01039801 FALSE TRUE
ENST00000423230 ENSG00000179832 No_inf pgKDN_inf MROH1 protein_coding protein_coding 24.78849 28.06041 20.505 1.924254 0.5720796 -0.452371 3.552951 1.9530796 4.209775 0.1251991 0.2046664 1.1040474 0.14999167 0.07120 0.206325 0.135125 0.07226727 0.01039801 FALSE TRUE
ENST00000528664 ENSG00000179832 No_inf pgKDN_inf MROH1 protein_coding retained_intron 24.78849 28.06041 20.505 1.924254 0.5720796 -0.452371 2.427021 4.3508029 1.438526 0.7603229 0.3391272 -1.5900080 0.09327500 0.15415 0.069825 -0.084325 0.50225186 0.01039801 FALSE FALSE
MSTRG.28362.11 ENSG00000179832 No_inf pgKDN_inf MROH1 protein_coding   24.78849 28.06041 20.505 1.924254 0.5720796 -0.452371 2.527116 3.4993053 0.871585 0.5759137 0.3094699 -1.9930139 0.09887500 0.12740 0.043500 -0.083900 0.39966419 0.01039801 TRUE TRUE
MSTRG.28362.16 ENSG00000179832 No_inf pgKDN_inf MROH1 protein_coding   24.78849 28.06041 20.505 1.924254 0.5720796 -0.452371 0.716582 0.3946038 1.755142 0.3946038 1.1165929 2.1252027 0.03411667 0.01580 0.086550 0.070750 0.75500136 0.01039801 FALSE TRUE
MSTRG.28362.18 ENSG00000179832 No_inf pgKDN_inf MROH1 protein_coding   24.78849 28.06041 20.505 1.924254 0.5720796 -0.452371 1.641413 2.2813521 1.347451 0.7608467 1.3474513 -0.7552987 0.06281667 0.07925 0.061150 -0.018100 0.55225189 0.01039801 FALSE TRUE
MSTRG.28362.20 ENSG00000179832 No_inf pgKDN_inf MROH1 protein_coding   24.78849 28.06041 20.505 1.924254 0.5720796 -0.452371 3.820512 5.5216775 2.467215 0.8881072 0.3939691 -1.1589978 0.14940000 0.19675 0.119800 -0.076950 0.63152746 0.01039801 FALSE TRUE
MSTRG.28362.21 ENSG00000179832 No_inf pgKDN_inf MROH1 protein_coding   24.78849 28.06041 20.505 1.924254 0.5720796 -0.452371 1.044631 2.2276179 0.000000 1.0476162 0.0000000 -7.8058199 0.03650833 0.07350 0.000000 -0.073500 0.07701781 0.01039801 TRUE TRUE
MSTRG.28362.4 ENSG00000179832 No_inf pgKDN_inf MROH1 protein_coding   24.78849 28.06041 20.505 1.924254 0.5720796 -0.452371 2.209683 0.0000000 3.836874 0.0000000 1.2802335 8.5875428 0.10028333 0.00000 0.187675 0.187675 0.01039801 0.01039801 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000179832 E001 0.0000000       8 144148016 144148016 1 +      
ENSG00000179832 E002 0.2459004 0.0165027903 8.089871e-01   8 144148017 144148034 18 + 0.109 0.083 -0.447
ENSG00000179832 E003 0.3645386 0.2496457370 4.645416e-01   8 144148035 144148035 1 + 0.196 0.083 -1.448
ENSG00000179832 E004 3.3442281 0.0053473185 3.458144e-01 0.636714729 8 144148036 144148076 41 + 0.553 0.679 0.553
ENSG00000179832 E005 0.0000000       8 144148645 144148662 18 +      
ENSG00000179832 E006 0.1265070 0.0122867841 7.360992e-01   8 144148663 144148712 50 + 0.000 0.083 10.216
ENSG00000179832 E007 0.0000000       8 144148810 144148882 73 +      
ENSG00000179832 E008 4.1882711 0.0488247121 8.738829e-01 0.956917217 8 144160970 144161024 55 + 0.699 0.715 0.068
ENSG00000179832 E009 4.7949058 0.0166316722 8.908157e-01 0.963657304 8 144161025 144161089 65 + 0.768 0.749 -0.075
ENSG00000179832 E010 5.9997277 0.0025644403 2.239948e-01 0.511622236 8 144163771 144163848 78 + 0.911 0.780 -0.506
ENSG00000179832 E011 7.6660492 0.0024854138 9.673592e-03 0.078638474 8 144168295 144168440 146 + 1.063 0.810 -0.956
ENSG00000179832 E012 9.8900175 0.0021577075 3.150728e-02 0.167575762 8 144179455 144179586 132 + 1.133 0.942 -0.697
ENSG00000179832 E013 16.0164998 0.0169389655 6.562220e-02 0.258076997 8 144180178 144180340 163 + 1.310 1.153 -0.557
ENSG00000179832 E014 9.2434367 0.0015390039 8.650732e-01 0.953346470 8 144180425 144180523 99 + 0.994 1.010 0.058
ENSG00000179832 E015 13.1280135 0.0308837879 4.632560e-01 0.733227331 8 144190784 144190935 152 + 1.184 1.112 -0.257
ENSG00000179832 E016 11.1535741 0.0087773111 2.074911e-01 0.491062563 8 144191715 144191855 141 + 1.142 1.027 -0.415
ENSG00000179832 E017 8.2249922 0.0297782755 4.516241e-01 0.724700071 8 144192309 144192401 93 + 1.006 0.921 -0.318
ENSG00000179832 E018 3.0824842 0.2300180974 9.002194e-01 0.967584718 8 144192402 144193282 881 + 0.586 0.617 0.138
ENSG00000179832 E019 0.1272623 0.0123829929 7.359759e-01   8 144199119 144199121 3 + 0.000 0.083 10.216
ENSG00000179832 E020 7.8303810 0.0043460473 1.455632e-01 0.406104150 8 144199122 144199200 79 + 1.018 0.875 -0.537
ENSG00000179832 E021 10.0142029 0.0029747696 4.237093e-02 0.200558395 8 144200428 144200541 114 + 1.133 0.953 -0.658
ENSG00000179832 E022 1.7480662 0.0235728766 1.107128e-01 0.349294193 8 144200542 144201179 638 + 0.269 0.519 1.428
ENSG00000179832 E023 8.2399331 0.0016727371 2.216181e-04 0.004548231 8 144212994 144213467 474 + 1.133 0.780 -1.321
ENSG00000179832 E024 1.7247688 0.0088796699 9.647920e-01 0.992593395 8 144214006 144214489 484 + 0.434 0.428 -0.032
ENSG00000179832 E025 5.0609992 0.0029249076 6.727305e-01 0.864471610 8 144220600 144220673 74 + 0.746 0.795 0.197
ENSG00000179832 E026 7.1446496 0.0023268158 8.886051e-01 0.962762873 8 144223108 144223230 123 + 0.895 0.910 0.056
ENSG00000179832 E027 0.3560444 0.0224427804 5.675027e-02   8 144238419 144238441 23 + 0.269 0.000 -12.800
ENSG00000179832 E028 7.0339814 0.0108464409 7.785235e-01 0.914890211 8 144238756 144238863 108 + 0.879 0.910 0.117
ENSG00000179832 E029 5.7937098 0.0027755840 7.961382e-01 0.922723031 8 144239035 144239111 77 + 0.808 0.837 0.113
ENSG00000179832 E030 6.4488940 0.0108759771 1.840254e-01 0.461104705 8 144239112 144239179 68 + 0.768 0.921 0.595
ENSG00000179832 E031 5.0821459 0.0306007983 3.589690e-01 0.648488764 8 144239323 144239363 41 + 0.699 0.823 0.500
ENSG00000179832 E032 9.8097843 0.0014645519 2.481468e-01 0.538969178 8 144239614 144239755 142 + 1.084 0.982 -0.375
ENSG00000179832 E033 6.1047124 0.0024303477 1.000382e-01 0.330522740 8 144240101 144240153 53 + 0.940 0.765 -0.678
ENSG00000179832 E034 8.6695520 0.0030170520 3.584492e-02 0.181619465 8 144240570 144240677 108 + 1.084 0.887 -0.732
ENSG00000179832 E035 4.3313143 0.0036406886 5.394167e-01 0.787827706 8 144240992 144241008 17 + 0.673 0.749 0.312
ENSG00000179832 E036 9.6143477 0.0016766435 8.198528e-01 0.934504376 8 144241009 144241111 103 + 1.006 1.027 0.077
ENSG00000179832 E037 9.4923275 0.3151732686 5.347873e-01 0.784647088 8 144241395 144241517 123 + 0.994 1.027 0.123
ENSG00000179832 E038 0.4985390 0.0239338314 4.931227e-01   8 144242211 144242368 158 + 0.109 0.212 1.138
ENSG00000179832 E039 12.4258305 0.0225826693 9.166367e-01 0.973774262 8 144242369 144242515 147 + 1.133 1.112 -0.073
ENSG00000179832 E040 2.4853602 0.0057231030 2.618693e-01 0.554634550 8 144242602 144242628 27 + 0.434 0.595 0.775
ENSG00000179832 E041 9.9193888 0.0014476049 1.339688e-01 0.388889751 8 144243494 144243616 123 + 1.104 0.972 -0.483
ENSG00000179832 E042 8.4960055 0.0017408740 9.651117e-01 0.992683126 8 144243863 144243942 80 + 0.968 0.972 0.017
ENSG00000179832 E043 11.3716801 0.0012401563 2.981788e-01 0.591203758 8 144244222 144244336 115 + 1.030 1.119 0.324
ENSG00000179832 E044 10.7947903 0.0012562121 5.325132e-02 0.229659932 8 144244444 144244539 96 + 0.954 1.126 0.628
ENSG00000179832 E045 12.5100038 0.0011434757 1.164728e-01 0.359970514 8 144245156 144245260 105 + 1.041 1.171 0.468
ENSG00000179832 E046 14.2861281 0.0010290742 9.876742e-01 0.999831138 8 144247301 144247436 136 + 1.176 1.177 0.004
ENSG00000179832 E047 13.4141750 0.0016919723 8.639720e-01 0.952931662 8 144247567 144247679 113 + 1.159 1.146 -0.047
ENSG00000179832 E048 15.3339941 0.0009112209 2.701365e-01 0.563815004 8 144248877 144249029 153 + 1.252 1.171 -0.285
ENSG00000179832 E049 16.8226479 0.0008437855 2.972286e-01 0.590385157 8 144250212 144250366 155 + 1.285 1.212 -0.257
ENSG00000179832 E050 14.9692918 0.0017959095 1.338069e-01 0.388759566 8 144250367 144252668 2302 + 1.123 1.239 0.412
ENSG00000179832 E051 5.2295234 0.0028350403 3.136874e-02 0.167116076 8 144254422 144254812 391 + 0.617 0.875 1.048
ENSG00000179832 E052 15.9439036 0.0008294723 2.379223e-01 0.526899034 8 144254813 144254978 166 + 1.168 1.255 0.308
ENSG00000179832 E053 15.8906533 0.0008504945 9.198357e-01 0.975031383 8 144255509 144255705 197 + 1.216 1.223 0.027
ENSG00000179832 E054 0.5076336 0.0157594722 8.967444e-02 0.311129065 8 144258335 144258385 51 + 0.000 0.264 12.216
ENSG00000179832 E055 0.7420473 0.0140346577 6.559659e-01 0.855926503 8 144258745 144258776 32 + 0.196 0.264 0.553
ENSG00000179832 E056 13.6754695 0.0010285627 8.526411e-01 0.947957116 8 144258777 144258914 138 + 1.151 1.165 0.052
ENSG00000179832 E057 16.0782754 0.0046343108 2.756784e-01 0.569257508 8 144259240 144259354 115 + 1.272 1.189 -0.293
ENSG00000179832 E058 16.4925937 0.0008641214 8.176883e-01 0.933615641 8 144259911 144260057 147 + 1.245 1.229 -0.057
ENSG00000179832 E059 19.1367432 0.0030381539 4.728076e-01 0.739978619 8 144260186 144260374 189 + 1.266 1.316 0.177
ENSG00000179832 E060 4.8950353 0.0034472918 3.379502e-04 0.006406681 8 144260375 144260482 108 + 0.434 0.899 2.012
ENSG00000179832 E061 4.3711269 0.0041575812 1.725295e-02 0.114921650 8 144260483 144260544 62 + 0.517 0.823 1.308
ENSG00000179832 E062 5.4075843 0.0085623936 9.574578e-05 0.002290001 8 144260545 144260676 132 + 0.434 0.942 2.177
ENSG00000179832 E063 21.1812542 0.0069514048 6.318222e-02 0.252859931 8 144260677 144260832 156 + 1.252 1.389 0.478
ENSG00000179832 E064 8.4716007 0.0017588231 4.997993e-01 0.759992568 8 144260907 144260914 8 + 1.006 0.942 -0.237
ENSG00000179832 E065 21.9548596 0.0007463790 5.093351e-01 0.767272840 8 144260915 144261041 127 + 1.328 1.370 0.145
ENSG00000179832 E066 15.6242416 0.0009462108 8.210173e-01 0.935014504 8 144261114 144261216 103 + 1.223 1.207 -0.058
ENSG00000179832 E067 1.4802534 0.0100311677 9.647130e-01 0.992558043 8 144261217 144261283 67 + 0.385 0.392 0.038
ENSG00000179832 E068 10.3824108 0.0014745319 3.166509e-01 0.609534013 8 144261284 144261349 66 + 0.994 1.083 0.327
ENSG00000179832 E069 22.3485816 0.0054224165 2.981103e-01 0.591113234 8 144261655 144262033 379 + 1.316 1.389 0.252

Help

Please Click HERE to learn more details about the results from DEXseq.