ENSG00000182022

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000346248 ENSG00000182022 No_inf pgKDN_inf CHST15 protein_coding protein_coding 11.51978 18.47546 8.611985 0.7427134 0.9490853 -1.100299 0.9441192 0.9579676 1.8743899 0.9579676 1.87438988 0.9610669 0.07188333 0.051250 0.164400 0.113150 0.91545588 0.02120891 FALSE TRUE
ENST00000435907 ENSG00000182022 No_inf pgKDN_inf CHST15 protein_coding protein_coding 11.51978 18.47546 8.611985 0.7427134 0.9490853 -1.100299 1.5535031 1.1485775 3.5119318 1.1485775 1.74111290 1.6040124 0.17663333 0.060675 0.469225 0.408550 0.31765129 0.02120891 FALSE TRUE
ENST00000476765 ENSG00000182022 No_inf pgKDN_inf CHST15 protein_coding protein_coding_CDS_not_defined 11.51978 18.47546 8.611985 0.7427134 0.9490853 -1.100299 0.2634111 0.0000000 0.7902332 0.0000000 0.79023316 6.3223485 0.02310833 0.000000 0.069325 0.069325 0.74695309 0.02120891 FALSE TRUE
ENST00000628426 ENSG00000182022 No_inf pgKDN_inf CHST15 protein_coding protein_coding 11.51978 18.47546 8.611985 0.7427134 0.9490853 -1.100299 0.9488799 1.4415903 0.8630037 0.2457088 0.22595011 -0.7335746 0.08453333 0.077150 0.103250 0.026100 0.88925522 0.02120891 FALSE TRUE
MSTRG.4091.3 ENSG00000182022 No_inf pgKDN_inf CHST15 protein_coding   11.51978 18.47546 8.611985 0.7427134 0.9490853 -1.100299 6.1284336 12.4569583 1.3224891 1.1990960 1.32248908 -3.2259139 0.48630000 0.678900 0.161450 -0.517450 0.02120891 0.02120891 FALSE TRUE
MSTRG.4091.4 ENSG00000182022 No_inf pgKDN_inf CHST15 protein_coding   11.51978 18.47546 8.611985 0.7427134 0.9490853 -1.100299 0.6496042 0.0000000 0.0000000 0.0000000 0.00000000 0.0000000 0.08615833 0.000000 0.000000 0.000000   0.02120891 FALSE TRUE
MSTRG.4091.7 ENSG00000182022 No_inf pgKDN_inf CHST15 protein_coding   11.51978 18.47546 8.611985 0.7427134 0.9490853 -1.100299 1.0091250 2.4703701 0.2499372 0.3622518 0.09049942 -3.2543203 0.06846667 0.132075 0.032375 -0.099700 0.15458577 0.02120891 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000182022 E001 0.0000000       10 124007668 124007672 5 -      
ENSG00000182022 E002 198.4566769 0.0032149504 4.914714e-01 7.537684e-01 10 124007673 124010339 2667 - 2.236 2.248 0.042
ENSG00000182022 E003 4.1325693 0.0037429238 2.019238e-01 4.843056e-01 10 124012333 124012354 22 - 0.527 0.708 0.793
ENSG00000182022 E004 10.0523508 0.0013987792 2.565715e-03 3.069638e-02 10 124012355 124012480 126 - 0.727 1.060 1.272
ENSG00000182022 E005 14.3893452 0.0296525696 4.466854e-01 7.210442e-01 10 124019653 124021081 1429 - 1.193 1.114 -0.283
ENSG00000182022 E006 1.7396550 0.0094574615 9.487823e-01 9.867620e-01 10 124021082 124021255 174 - 0.411 0.401 -0.055
ENSG00000182022 E007 11.7014180 0.0012012029 9.777041e-01 9.966827e-01 10 124021256 124021412 157 - 1.051 1.054 0.010
ENSG00000182022 E008 10.9882284 0.0014110463 4.012448e-01 6.844653e-01 10 124038515 124038671 157 - 0.968 1.048 0.297
ENSG00000182022 E009 14.1498978 0.0034172215 8.940687e-09 6.429427e-07 10 124038905 124040042 1138 - 0.575 1.229 2.530
ENSG00000182022 E010 7.7103216 0.0042453835 8.276779e-01 9.376309e-01 10 124042301 124042447 147 - 0.908 0.886 -0.087
ENSG00000182022 E011 4.9257132 0.0035523862 4.774655e-02 2.148877e-01 10 124044580 124044637 58 - 0.887 0.653 -0.941
ENSG00000182022 E012 13.2816848 0.0010099054 3.584110e-01 6.479365e-01 10 124044638 124044919 282 - 1.159 1.082 -0.274
ENSG00000182022 E013 15.9371902 0.0008903816 1.097949e-02 8.552396e-02 10 124045667 124046012 346 - 1.308 1.119 -0.669
ENSG00000182022 E014 24.3039915 0.0110195805 2.700016e-03 3.187887e-02 10 124046013 124046724 712 - 1.496 1.284 -0.737
ENSG00000182022 E015 0.0000000       10 124063741 124063789 49 -      
ENSG00000182022 E016 0.7531559 0.0313044138 5.504644e-01 7.948458e-01 10 124092324 124092454 131 - 0.144 0.245 0.945
ENSG00000182022 E017 0.0000000       10 124092710 124092743 34 -      
ENSG00000182022 E018 1.6153571 0.0085024685 8.132620e-01 9.315795e-01 10 124093469 124093598 130 - 0.411 0.374 -0.207

Help

Please Click HERE to learn more details about the results from DEXseq.