ENSG00000182087

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000356663 ENSG00000182087 No_inf pgKDN_inf TMEM259 protein_coding protein_coding 174.7596 161.6314 161.4636 1.312097 2.971683 -0.001498361 73.22916 51.00312 81.39837 3.374377 5.402728 0.6743089 0.4181167 0.315975 0.503775 0.187800 0.004399251 0.003719109 FALSE TRUE
MSTRG.14167.3 ENSG00000182087 No_inf pgKDN_inf TMEM259 protein_coding   174.7596 161.6314 161.4636 1.312097 2.971683 -0.001498361 35.48051 32.04883 36.47043 5.520915 2.513387 0.1864006 0.2038583 0.197550 0.226125 0.028575 0.835370592 0.003719109 FALSE TRUE
MSTRG.14167.8 ENSG00000182087 No_inf pgKDN_inf TMEM259 protein_coding   174.7596 161.6314 161.4636 1.312097 2.971683 -0.001498361 41.10586 49.02422 26.91847 2.766180 1.856029 -0.8646566 0.2352750 0.303475 0.166925 -0.136550 0.003719109 0.003719109 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000182087 E001 0.0000000       19 1009648 1009649 2 -      
ENSG00000182087 E002 0.0000000       19 1009650 1009650 1 -      
ENSG00000182087 E003 0.0000000       19 1009651 1009651 1 -      
ENSG00000182087 E004 0.0000000       19 1009652 1009652 1 -      
ENSG00000182087 E005 0.0000000       19 1009653 1009719 67 -      
ENSG00000182087 E006 112.0188411 1.199813e-03 6.276161e-01 8.399860e-01 19 1009720 1009861 142 - 2.060 2.045 -0.051
ENSG00000182087 E007 313.1763135 8.549029e-04 7.892945e-01 9.191470e-01 19 1009862 1010176 315 - 2.499 2.494 -0.017
ENSG00000182087 E008 94.8490805 2.174626e-04 7.087676e-01 8.819572e-01 19 1010177 1010694 518 - 1.974 1.986 0.039
ENSG00000182087 E009 115.2889835 1.512326e-04 8.736693e-01 9.569172e-01 19 1010695 1010895 201 - 2.062 2.066 0.015
ENSG00000182087 E010 0.8685892 2.330785e-01 4.486022e-01 7.225813e-01 19 1010896 1010990 95 - 0.179 0.338 1.207
ENSG00000182087 E011 4.8198803 5.121875e-03 1.354433e-01 3.911017e-01 19 1010991 1011095 105 - 0.659 0.838 0.723
ENSG00000182087 E012 73.6694607 2.386848e-04 7.220623e-01 8.882537e-01 19 1011096 1011195 100 - 1.879 1.866 -0.042
ENSG00000182087 E013 11.0219316 4.159034e-03 1.558525e-02 1.078956e-01 19 1011196 1011366 171 - 0.949 1.166 0.790
ENSG00000182087 E014 161.1072034 1.238593e-04 2.523122e-01 5.437846e-01 19 1011367 1011499 133 - 2.223 2.196 -0.090
ENSG00000182087 E015 3.7264757 4.119518e-02 7.736919e-02 2.845435e-01 19 1011500 1011579 80 - 0.517 0.774 1.109
ENSG00000182087 E016 86.4062445 1.805077e-04 9.401534e-03 7.719018e-02 19 1011580 1011612 33 - 1.983 1.900 -0.281
ENSG00000182087 E017 90.1024069 1.766771e-04 1.711099e-01 4.434652e-01 19 1011613 1011663 51 - 1.981 1.938 -0.145
ENSG00000182087 E018 10.6350891 1.375937e-03 2.676571e-02 1.517962e-01 19 1011664 1011740 77 - 0.949 1.144 0.713
ENSG00000182087 E019 121.7514056 1.342789e-04 3.985910e-02 1.935326e-01 19 1011741 1011798 58 - 2.117 2.061 -0.186
ENSG00000182087 E020 1.3507272 9.272986e-03 8.660376e-01 9.538457e-01 19 1011852 1011865 14 - 0.357 0.382 0.149
ENSG00000182087 E021 0.6157612 1.583442e-02 7.207090e-01 8.875222e-01 19 1011866 1011891 26 - 0.179 0.232 0.471
ENSG00000182087 E022 175.2228435 1.111748e-04 3.001422e-01 5.930211e-01 19 1011892 1011992 101 - 2.257 2.234 -0.077
ENSG00000182087 E023 129.3016214 2.394969e-03 4.729191e-01 7.400887e-01 19 1012066 1012112 47 - 2.126 2.103 -0.078
ENSG00000182087 E024 113.8185391 2.501421e-03 5.884676e-01 8.174104e-01 19 1012113 1012188 76 - 2.048 2.067 0.064
ENSG00000182087 E025 76.1832109 2.428082e-04 2.181511e-12 2.723556e-10 19 1012189 1012462 274 - 1.734 1.985 0.844
ENSG00000182087 E026 105.9882542 8.888312e-04 9.997926e-01 1.000000e+00 19 1012463 1012540 78 - 2.028 2.028 0.000
ENSG00000182087 E027 84.1081100 1.825706e-04 1.581491e-02 1.088590e-01 19 1012541 1012573 33 - 1.969 1.890 -0.265
ENSG00000182087 E028 136.0957190 1.281151e-04 5.284561e-02 2.284661e-01 19 1013241 1013340 100 - 2.162 2.112 -0.166
ENSG00000182087 E029 2.0041322 8.868061e-03 1.607607e-02 1.099894e-01 19 1013341 1013358 18 - 0.246 0.608 2.002
ENSG00000182087 E030 2.3857272 5.881080e-03 3.444712e-03 3.829872e-02 19 1013359 1013639 281 - 0.246 0.678 2.301
ENSG00000182087 E031 144.3785540 2.050947e-03 8.658445e-01 9.537423e-01 19 1014192 1014317 126 - 2.159 2.163 0.016
ENSG00000182087 E032 184.0272627 1.102680e-04 7.851399e-02 2.870703e-01 19 1014318 1014473 156 - 2.245 2.283 0.130
ENSG00000182087 E033 0.0000000       19 1017279 1017420 142 -      
ENSG00000182087 E034 274.5677506 7.200384e-05 1.054870e-01 3.397836e-01 19 1020772 1021179 408 - 2.423 2.452 0.096

Help

Please Click HERE to learn more details about the results from DEXseq.