ENSG00000182095

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000328270 ENSG00000182095 No_inf pgKDN_inf TNRC18 protein_coding protein_coding 55.26062 55.65165 63.14162 1.77797 4.755709 0.182136 8.2565035 11.4280605 6.928985 0.8173041 2.4064325 -0.721046 0.14811667 0.207025 0.103775 -0.103250 0.58318258 0.01644195 FALSE FALSE
ENST00000399537 ENSG00000182095 No_inf pgKDN_inf TNRC18 protein_coding protein_coding 55.26062 55.65165 63.14162 1.77797 4.755709 0.182136 0.9244293 2.7732880 0.000000 1.0259627 0.0000000 -8.120646 0.01700000 0.051000 0.000000 -0.051000 0.03256820 0.01644195 FALSE TRUE
ENST00000430969 ENSG00000182095 No_inf pgKDN_inf TNRC18 protein_coding protein_coding 55.26062 55.65165 63.14162 1.77797 4.755709 0.182136 4.6853279 0.7129545 7.326245 0.7129545 0.8547966 3.343065 0.08525833 0.012150 0.116600 0.104450 0.01644195 0.01644195 FALSE TRUE
ENST00000440081 ENSG00000182095 No_inf pgKDN_inf TNRC18 protein_coding protein_coding 55.26062 55.65165 63.14162 1.77797 4.755709 0.182136 9.1913044 5.0358731 16.764302 2.4397216 1.0214976 1.733077 0.15680000 0.087125 0.269350 0.182225 0.22256392 0.01644195 FALSE FALSE
ENST00000455076 ENSG00000182095 No_inf pgKDN_inf TNRC18 protein_coding protein_coding 55.26062 55.65165 63.14162 1.77797 4.755709 0.182136 1.7752105 0.0000000 5.325632 0.0000000 3.0747696 9.059515 0.02544167 0.000000 0.076325 0.076325 0.45917633 0.01644195 FALSE FALSE
MSTRG.25790.1 ENSG00000182095 No_inf pgKDN_inf TNRC18 protein_coding   55.26062 55.65165 63.14162 1.77797 4.755709 0.182136 14.1562175 20.3866697 7.653383 2.1691417 3.9844336 -1.412280 0.27434167 0.369100 0.136350 -0.232750 0.26794816 0.01644195 FALSE TRUE
MSTRG.25790.2 ENSG00000182095 No_inf pgKDN_inf TNRC18 protein_coding   55.26062 55.65165 63.14162 1.77797 4.755709 0.182136 6.1628101 1.6120342 12.135785 1.6120342 3.8239579 2.904580 0.10115833 0.027725 0.182875 0.155150 0.04544278 0.01644195 FALSE TRUE
MSTRG.25790.5 ENSG00000182095 No_inf pgKDN_inf TNRC18 protein_coding   55.26062 55.65165 63.14162 1.77797 4.755709 0.182136 4.7001114 6.2665824 2.667366 1.2736449 1.5481282 -1.229165 0.09243333 0.112125 0.047475 -0.064650 0.48074579 0.01644195 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000182095 E001 0.0000000       7 5306790 5306810 21 -      
ENSG00000182095 E002 0.0000000       7 5306811 5306899 89 -      
ENSG00000182095 E003 566.2536588 0.0008762095 2.038559e-15 3.569728e-13 7 5306900 5308312 1413 - 2.679 2.805 0.419
ENSG00000182095 E004 41.9095662 0.0003359189 2.509068e-02 1.457285e-01 7 5308875 5308949 75 - 1.566 1.679 0.387
ENSG00000182095 E005 87.9574910 0.0001708387 6.166317e-03 5.760174e-02 7 5309132 5309368 237 - 1.892 1.989 0.328
ENSG00000182095 E006 53.9641151 0.0002648511 2.348601e-02 1.400559e-01 7 5312503 5313110 608 - 1.680 1.782 0.347
ENSG00000182095 E007 124.8703598 0.0002021624 7.672818e-03 6.721222e-02 7 5313111 5313859 749 - 2.052 2.134 0.274
ENSG00000182095 E008 18.6336511 0.0008494644 1.094799e-01 3.472732e-01 7 5313860 5313863 4 - 1.223 1.341 0.416
ENSG00000182095 E009 0.8886653 0.0121402117 6.979326e-03 6.299759e-02 7 5314980 5314983 4 - 0.000 0.420 11.771
ENSG00000182095 E010 59.0912053 0.0031048061 1.432287e-01 4.029832e-01 7 5314984 5315148 165 - 1.735 1.810 0.254
ENSG00000182095 E011 41.9827115 0.0033210265 8.785675e-01 9.588930e-01 7 5315956 5316072 117 - 1.622 1.639 0.058
ENSG00000182095 E012 0.8703181 0.0131470235 3.255903e-01 6.181058e-01 7 5320140 5320317 178 - 0.180 0.335 1.177
ENSG00000182095 E013 37.0721147 0.0004411944 1.263888e-01 3.768691e-01 7 5320318 5320426 109 - 1.531 1.616 0.290
ENSG00000182095 E014 35.7267726 0.0003994772 9.710044e-02 3.245218e-01 7 5320532 5320607 76 - 1.511 1.603 0.317
ENSG00000182095 E015 0.0000000       7 5320608 5320662 55 -      
ENSG00000182095 E016 38.4231449 0.0004768111 8.111478e-02 2.926103e-01 7 5321073 5321190 118 - 1.541 1.635 0.322
ENSG00000182095 E017 14.3058044 0.0049595826 1.374211e-01 3.945524e-01 7 5324214 5324221 8 - 1.108 1.238 0.461
ENSG00000182095 E018 20.5480599 0.0006696808 3.242676e-01 6.166924e-01 7 5324222 5324246 25 - 1.291 1.364 0.255
ENSG00000182095 E019 35.8415169 0.0015329506 9.933532e-01 1.000000e+00 7 5324247 5324355 109 - 1.559 1.569 0.033
ENSG00000182095 E020 38.9074485 0.0022355112 9.815819e-01 9.982180e-01 7 5325096 5325248 153 - 1.595 1.603 0.028
ENSG00000182095 E021 1.9893660 0.1230131889 2.763320e-01 5.698436e-01 7 5325249 5325574 326 - 0.359 0.552 0.993
ENSG00000182095 E022 6.8791991 0.0021829820 9.399851e-01 9.830357e-01 7 5329937 5329969 33 - 0.886 0.902 0.062
ENSG00000182095 E023 71.1284939 0.0008527545 9.011212e-02 3.118388e-01 7 5332622 5333049 428 - 1.885 1.831 -0.180
ENSG00000182095 E024 46.3394746 0.0014746116 6.250461e-01 8.386201e-01 7 5345562 5345810 249 - 1.656 1.688 0.108
ENSG00000182095 E025 0.1170040 0.0117355218 4.761771e-01   7 5351213 5351302 90 - 0.099 0.000 -9.655
ENSG00000182095 E026 21.6261146 0.0093520785 1.233046e-01 3.717127e-01 7 5351303 5351818 516 - 1.406 1.303 -0.357
ENSG00000182095 E027 49.7271018 0.0002783149 2.185490e-01 5.051535e-01 7 5351819 5352001 183 - 1.726 1.684 -0.145
ENSG00000182095 E028 40.2032509 0.0004312840 4.406240e-01 7.163479e-01 7 5352002 5352094 93 - 1.628 1.601 -0.092
ENSG00000182095 E029 100.0151075 0.0001805504 1.947468e-03 2.505600e-02 7 5356916 5357276 361 - 2.046 1.963 -0.279
ENSG00000182095 E030 50.4258926 0.0040927263 2.943136e-02 1.611851e-01 7 5359398 5359569 172 - 1.760 1.662 -0.334
ENSG00000182095 E031 33.6259914 0.0004992076 1.589798e-03 2.139325e-02 7 5361594 5361722 129 - 1.614 1.461 -0.523
ENSG00000182095 E032 37.5479487 0.0003749979 1.872353e-03 2.431580e-02 7 5361897 5362033 137 - 1.656 1.514 -0.484
ENSG00000182095 E033 36.7105212 0.0003785834 1.618503e-01 4.301175e-01 7 5362650 5362825 176 - 1.606 1.547 -0.203
ENSG00000182095 E034 133.5950237 0.0001325172 1.578346e-03 2.126568e-02 7 5370375 5371364 990 - 2.165 2.093 -0.240
ENSG00000182095 E035 40.8050960 0.0003489751 2.080977e-02 1.300214e-01 7 5374055 5374481 427 - 1.670 1.572 -0.335
ENSG00000182095 E036 6.1053610 0.0033475301 3.266761e-01 6.190776e-01 7 5374482 5374484 3 - 0.900 0.803 -0.376
ENSG00000182095 E037 10.5673616 0.0030134657 1.106172e-02 8.589155e-02 7 5376034 5376113 80 - 1.166 0.950 -0.785
ENSG00000182095 E038 14.7203306 0.0009687681 1.055556e-02 8.324054e-02 7 5376114 5376224 111 - 1.285 1.102 -0.651
ENSG00000182095 E039 19.5044565 0.0131798208 5.370140e-02 2.306999e-01 7 5376847 5376993 147 - 1.383 1.238 -0.507
ENSG00000182095 E040 30.0778529 0.0004502060 6.150793e-04 1.023563e-02 7 5377371 5377576 206 - 1.578 1.402 -0.604
ENSG00000182095 E041 20.6953329 0.0007376646 2.129333e-03 2.679148e-02 7 5377922 5378024 103 - 1.427 1.238 -0.659
ENSG00000182095 E042 101.9499826 0.0001569726 7.672046e-13 1.024218e-10 7 5387672 5389304 1633 - 2.109 1.906 -0.681
ENSG00000182095 E043 5.9479980 0.0560323905 7.991467e-02 2.901782e-01 7 5389305 5389336 32 - 0.953 0.715 -0.930
ENSG00000182095 E044 1.2505321 0.0099080948 7.880089e-02 2.877376e-01 7 5389450 5390484 1035 - 0.180 0.457 1.855
ENSG00000182095 E045 14.2155856 0.0065258951 3.610858e-03 3.960708e-02 7 5390485 5390628 144 - 1.291 1.060 -0.823
ENSG00000182095 E046 0.0000000       7 5394042 5394073 32 -      
ENSG00000182095 E047 15.2042117 0.0009523479 3.796967e-03 4.096458e-02 7 5394440 5394595 156 - 1.308 1.102 -0.730
ENSG00000182095 E048 2.0754698 0.0120487128 6.280360e-01 8.401333e-01 7 5397122 5397307 186 - 0.521 0.457 -0.315
ENSG00000182095 E049 0.8619138 0.0174588692 8.306415e-01 9.386350e-01 7 5407150 5407394 245 - 0.248 0.286 0.270
ENSG00000182095 E050 13.9213499 0.0056526026 2.428254e-04 4.906911e-03 7 5421060 5421489 430 - 1.308 1.013 -1.052
ENSG00000182095 E051 11.3305379 0.0012054741 5.505831e-02 2.337465e-01 7 5423441 5423834 394 - 1.166 1.013 -0.551
ENSG00000182095 E052 0.8692159 0.2729753601 5.025037e-01 7.621494e-01 7 5425291 5425414 124 - 0.180 0.335 1.176

Help

Please Click HERE to learn more details about the results from DEXseq.