ENSG00000182173

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000333213 ENSG00000182173 No_inf pgKDN_inf TSEN54 protein_coding protein_coding 16.10482 12.46058 14.60993 0.9879064 0.9971754 0.2294076 8.9624537 5.5071039 11.4042092 1.1008279 0.9075808 1.048848 0.56179167 0.433600 0.779325 0.345725 0.006734556 0.006734556 FALSE TRUE
ENST00000579449 ENSG00000182173 No_inf pgKDN_inf TSEN54 protein_coding retained_intron 16.10482 12.46058 14.60993 0.9879064 0.9971754 0.2294076 1.7982250 0.4253751 1.4885068 0.4253751 0.5917824 1.783195 0.10150833 0.035050 0.094675 0.059625 0.528334714 0.006734556 TRUE TRUE
ENST00000679370 ENSG00000182173 No_inf pgKDN_inf TSEN54 protein_coding retained_intron 16.10482 12.46058 14.60993 0.9879064 0.9971754 0.2294076 0.5789988 1.0820253 0.2698564 0.2694286 0.1558018 -1.964247 0.04087500 0.084600 0.020500 -0.064100 0.296498753 0.006734556 TRUE TRUE
ENST00000679443 ENSG00000182173 No_inf pgKDN_inf TSEN54 protein_coding retained_intron 16.10482 12.46058 14.60993 0.9879064 0.9971754 0.2294076 1.1262774 2.3573216 0.0000000 0.7918101 0.0000000 -7.887112 0.08556667 0.205375 0.000000 -0.205375 0.033991323 0.006734556 FALSE TRUE
ENST00000679928 ENSG00000182173 No_inf pgKDN_inf TSEN54 protein_coding nonsense_mediated_decay 16.10482 12.46058 14.60993 0.9879064 0.9971754 0.2294076 0.8197836 1.9549161 0.5044347 0.6875018 0.3894758 -1.933408 0.06611667 0.157875 0.040475 -0.117400 0.502079634 0.006734556 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000182173 E001 0.4986009 0.0564842661 0.3374783230   17 75515944 75516059 116 + 0.095 0.238 1.573
ENSG00000182173 E002 0.8883830 0.0125245598 0.0048087656 0.048180561 17 75516060 75516386 327 + 0.000 0.432 13.578
ENSG00000182173 E003 0.0000000       17 75516511 75516525 15 +      
ENSG00000182173 E004 0.1176306 0.0118019996 0.5265816759   17 75516526 75516527 2 + 0.095 0.000 -11.854
ENSG00000182173 E005 0.2352613 0.2303624511 0.2846157104   17 75516528 75516535 8 + 0.174 0.000 -12.416
ENSG00000182173 E006 1.4528761 0.0099703539 0.2342186118 0.523214104 17 75516536 75516547 12 + 0.472 0.296 -1.012
ENSG00000182173 E007 1.4528761 0.0099703539 0.2342186118 0.523214104 17 75516548 75516551 4 + 0.472 0.296 -1.012
ENSG00000182173 E008 1.6987765 0.0095827816 0.2692468263 0.562785658 17 75516552 75516560 9 + 0.507 0.346 -0.860
ENSG00000182173 E009 2.4342484 0.0060341172 0.3462687661 0.637082652 17 75516561 75516596 36 + 0.597 0.470 -0.597
ENSG00000182173 E010 2.6885210 0.0055478346 0.6308796595 0.841641030 17 75516597 75516616 20 + 0.597 0.536 -0.275
ENSG00000182173 E011 3.2945287 0.0322041765 0.5339796954 0.784301059 17 75516746 75516811 66 + 0.671 0.594 -0.334
ENSG00000182173 E012 2.3204898 0.0180007328 0.7767095511 0.914226008 17 75516812 75516814 3 + 0.539 0.504 -0.164
ENSG00000182173 E013 5.1338191 0.0084227884 0.6971539427 0.876361747 17 75516815 75516910 96 + 0.807 0.769 -0.150
ENSG00000182173 E014 0.0000000       17 75516911 75516969 59 +      
ENSG00000182173 E015 0.0000000       17 75516970 75517008 39 +      
ENSG00000182173 E016 2.4593274 0.0063318243 0.7012963907 0.878315884 17 75517009 75517014 6 + 0.507 0.566 0.277
ENSG00000182173 E017 5.4917688 0.0101378885 0.4150859319 0.695235016 17 75517015 75517072 58 + 0.854 0.769 -0.334
ENSG00000182173 E018 0.0000000       17 75517073 75517160 88 +      
ENSG00000182173 E019 10.4249659 0.0019127079 0.8335588944 0.940079867 17 75517161 75517244 84 + 1.044 1.069 0.090
ENSG00000182173 E020 0.4906674 0.0158741011 0.9789808072   17 75517245 75517475 231 + 0.174 0.172 -0.012
ENSG00000182173 E021 12.9714475 0.0011920676 0.7489731261 0.901013017 17 75517557 75517655 99 + 1.155 1.136 -0.067
ENSG00000182173 E022 5.8759935 0.0027217341 0.9367699357 0.981956485 17 75518995 75519002 8 + 0.839 0.836 -0.012
ENSG00000182173 E023 8.3225178 0.0026316003 0.9273708389 0.978393766 17 75519003 75519047 45 + 0.971 0.968 -0.012
ENSG00000182173 E024 0.5001731 0.0184695779 0.3340893115 0.625988561 17 75519755 75519944 190 + 0.095 0.238 1.573
ENSG00000182173 E025 0.6339843 0.0188555306 0.0218926239 0.134344837 17 75521355 75521408 54 + 0.000 0.346 13.171
ENSG00000182173 E026 11.0193926 0.0127440167 0.9640880979 0.992426527 17 75521409 75521510 102 + 1.081 1.078 -0.012
ENSG00000182173 E027 2.1491120 0.0185080262 0.0001190004 0.002741636 17 75521511 75521675 165 + 0.095 0.690 3.988
ENSG00000182173 E028 1.5151281 0.0085229231 0.0022586982 0.028017624 17 75521676 75521704 29 + 0.095 0.566 3.447
ENSG00000182173 E029 22.4936536 0.0032804542 0.3643673044 0.653143652 17 75521705 75522006 302 + 1.395 1.346 -0.169
ENSG00000182173 E030 24.0904854 0.0006959427 0.4831873388 0.747877117 17 75522007 75522248 242 + 1.416 1.383 -0.115
ENSG00000182173 E031 10.7210120 0.0016188303 0.1586914616 0.425753886 17 75522249 75522333 85 + 1.124 1.011 -0.408
ENSG00000182173 E032 4.0925968 0.0036811822 0.0640232266 0.254912004 17 75522334 75522521 188 + 0.569 0.804 0.988
ENSG00000182173 E033 1.1265410 0.0566115273 0.1151893720 0.357746377 17 75522522 75522535 14 + 0.174 0.432 1.795
ENSG00000182173 E034 10.2876827 0.0014306760 0.0036506448 0.039868693 17 75522536 75523151 616 + 0.897 1.159 0.962
ENSG00000182173 E035 2.7144512 0.0055356615 0.4316450720 0.709326014 17 75523152 75523249 98 + 0.507 0.620 0.518
ENSG00000182173 E036 0.8718902 0.2247962059 0.4037044622 0.686540976 17 75523250 75523274 25 + 0.174 0.346 1.310
ENSG00000182173 E037 6.9415423 0.0155407871 0.2213568811 0.508484897 17 75523275 75523335 61 + 0.960 0.836 -0.472
ENSG00000182173 E038 1.7247057 0.0106076835 0.6357883893 0.844617133 17 75523336 75523662 327 + 0.394 0.470 0.403
ENSG00000182173 E039 12.6923144 0.0010368267 0.2608788529 0.553467078 17 75523663 75523779 117 + 1.176 1.095 -0.291
ENSG00000182173 E040 30.2753207 0.0005443097 0.8884168860 0.962726815 17 75524262 75524735 474 + 1.488 1.501 0.046

Help

Please Click HERE to learn more details about the results from DEXseq.