ENSG00000182179

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000333486 ENSG00000182179 No_inf pgKDN_inf UBA7 protein_coding protein_coding 54.68357 117.2133 20.89346 4.846441 1.945671 -2.487446 13.079685 21.945915 9.1235784 1.345894 0.3251962 -1.2653576 0.32041667 0.188650 0.447350 0.258700 0.001662123 0.001662123 FALSE TRUE
ENST00000473992 ENSG00000182179 No_inf pgKDN_inf UBA7 protein_coding retained_intron 54.68357 117.2133 20.89346 4.846441 1.945671 -2.487446 2.822256 4.887929 0.9701615 1.985099 0.9701615 -2.3210806 0.05732500 0.041350 0.040200 -0.001150 0.764137642 0.001662123 TRUE FALSE
ENST00000478688 ENSG00000182179 No_inf pgKDN_inf UBA7 protein_coding retained_intron 54.68357 117.2133 20.89346 4.846441 1.945671 -2.487446 2.005311 2.320331 1.7152573 2.320331 1.0473513 -0.4337232 0.05665000 0.020075 0.078975 0.058900 0.531484805 0.001662123 FALSE TRUE
ENST00000483751 ENSG00000182179 No_inf pgKDN_inf UBA7 protein_coding retained_intron 54.68357 117.2133 20.89346 4.846441 1.945671 -2.487446 5.136453 13.299885 0.9823839 0.392867 0.4479853 -3.7454560 0.06960833 0.114200 0.050325 -0.063875 0.395684386 0.001662123 FALSE TRUE
ENST00000489826 ENSG00000182179 No_inf pgKDN_inf UBA7 protein_coding retained_intron 54.68357 117.2133 20.89346 4.846441 1.945671 -2.487446 7.045484 18.652533 0.7786099 1.788836 0.4495478 -4.5646892 0.08597500 0.158400 0.032175 -0.126225 0.021910527 0.001662123 FALSE TRUE
MSTRG.20159.2 ENSG00000182179 No_inf pgKDN_inf UBA7 protein_coding   54.68357 117.2133 20.89346 4.846441 1.945671 -2.487446 5.026258 13.116641 1.2660651 1.709568 0.5512934 -3.3627240 0.07056667 0.112400 0.069600 -0.042800 0.683280654 0.001662123 FALSE TRUE
MSTRG.20159.3 ENSG00000182179 No_inf pgKDN_inf UBA7 protein_coding   54.68357 117.2133 20.89346 4.846441 1.945671 -2.487446 11.133255 24.464946 4.0510251 3.144446 0.8716895 -2.5913898 0.19499167 0.210950 0.189050 -0.021900 0.925303390 0.001662123 FALSE TRUE
MSTRG.20159.7 ENSG00000182179 No_inf pgKDN_inf UBA7 protein_coding   54.68357 117.2133 20.89346 4.846441 1.945671 -2.487446 2.987437 6.084773 0.7480864 4.569649 0.7480864 -3.0071383 0.05125833 0.048525 0.031000 -0.017525 0.948750212 0.001662123 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000182179 E001 0.000000       3 49805209 49805210 2 -      
ENSG00000182179 E002 2.402030 0.0216998682 1.708934e-01 0.4432511078 3 49805211 49805223 13 - 0.196 0.462 1.737
ENSG00000182179 E003 36.206879 0.0193936005 3.611724e-01 0.6507473117 3 49805224 49805437 214 - 1.354 1.437 0.285
ENSG00000182179 E004 10.088041 0.0212467860 9.888906e-02 0.3282345240 3 49805438 49805896 459 - 0.697 0.939 0.949
ENSG00000182179 E005 38.574751 0.0006271528 5.191502e-01 0.7739164125 3 49805897 49805997 101 - 1.415 1.458 0.146
ENSG00000182179 E006 2.142750 0.1687249108 7.530491e-01 0.9027951701 3 49805998 49806072 75 - 0.330 0.412 0.473
ENSG00000182179 E007 42.996368 0.0003233704 2.491866e-01 0.5401128966 3 49806073 49806136 64 - 1.434 1.507 0.252
ENSG00000182179 E008 33.812012 0.0004360026 4.834119e-01 0.7479800070 3 49806137 49806165 29 - 1.354 1.404 0.170
ENSG00000182179 E009 38.009524 0.0003999475 1.109855e-05 0.0003741444 3 49806166 49807735 1570 - 1.131 1.483 1.231
ENSG00000182179 E010 101.880217 0.0001578626 4.939353e-01 0.7557112298 3 49807736 49807927 192 - 1.888 1.860 -0.094
ENSG00000182179 E011 42.049137 0.0003572381 9.316469e-01 0.9800172656 3 49808020 49808041 22 - 1.493 1.487 -0.022
ENSG00000182179 E012 54.428928 0.0002895792 2.903110e-01 0.5839785844 3 49808042 49808112 71 - 1.546 1.605 0.203
ENSG00000182179 E013 46.119080 0.0003183582 5.150564e-01 0.7713289400 3 49808386 49808468 83 - 1.493 1.532 0.133
ENSG00000182179 E014 24.611653 0.0018163446 8.967082e-01 0.9659630911 3 49808976 49809007 32 - 1.257 1.267 0.035
ENSG00000182179 E015 61.344060 0.0002386842 2.819324e-01 0.5753770789 3 49809008 49809159 152 - 1.599 1.655 0.193
ENSG00000182179 E016 7.596440 0.0018062653 1.983901e-03 0.0254216518 3 49809160 49809183 24 - 0.330 0.852 2.425
ENSG00000182179 E017 14.903803 0.0009108421 3.377525e-03 0.0377697348 3 49809184 49809389 206 - 0.744 1.100 1.348
ENSG00000182179 E018 39.449248 0.0003577553 6.197433e-01 0.8354911675 3 49809390 49809464 75 - 1.434 1.466 0.109
ENSG00000182179 E019 4.051820 0.0249250593 2.661441e-02 0.1512281295 3 49809465 49809541 77 - 0.196 0.630 2.521
ENSG00000182179 E020 28.052842 0.0008332108 1.912721e-01 0.4707310778 3 49809542 49809574 33 - 1.229 1.333 0.367
ENSG00000182179 E021 62.389287 0.0002346985 9.784421e-01 0.9970446311 3 49809575 49809725 151 - 1.657 1.654 -0.008
ENSG00000182179 E022 0.126854 0.0123284412 7.370447e-01   3 49809726 49809762 37 - 0.000 0.043 7.425
ENSG00000182179 E023 34.099001 0.0004159988 3.703689e-01 0.6586696357 3 49809815 49809879 65 - 1.452 1.391 -0.211
ENSG00000182179 E024 1.015237 0.0115364966 2.655732e-01 0.5588760121 3 49809880 49809887 8 - 0.000 0.265 10.272
ENSG00000182179 E025 14.782790 0.0009382133 3.834158e-01 0.6695097835 3 49809978 49809978 1 - 1.131 1.046 -0.308
ENSG00000182179 E026 66.896245 0.0040748090 6.918484e-02 0.2657513691 3 49809979 49810183 205 - 1.767 1.668 -0.334
ENSG00000182179 E027 12.654177 0.0082159268 1.255560e-03 0.0178344450 3 49810184 49810262 79 - 0.585 1.042 1.815
ENSG00000182179 E028 56.586907 0.0009415389 5.725468e-01 0.8084407144 3 49810263 49810428 166 - 1.640 1.609 -0.108
ENSG00000182179 E029 11.558113 0.0014508284 6.857145e-01 0.8702343125 3 49810429 49810459 31 - 0.924 0.969 0.170
ENSG00000182179 E030 13.571783 0.0014168929 6.107606e-01 0.8306842650 3 49810460 49810516 57 - 0.979 1.033 0.199
ENSG00000182179 E031 17.243322 0.0025472929 6.449670e-02 0.2559354760 3 49810517 49810525 9 - 1.257 1.092 -0.585
ENSG00000182179 E032 42.903993 0.0012937247 2.087118e-02 0.1302033750 3 49810526 49810672 147 - 1.611 1.473 -0.470
ENSG00000182179 E033 32.063085 0.0004279849 1.809557e-01 0.4567634333 3 49810752 49810832 81 - 1.452 1.360 -0.318
ENSG00000182179 E034 37.124984 0.0006868126 4.608213e-01 0.7319790207 3 49810984 49811091 108 - 1.477 1.428 -0.169
ENSG00000182179 E035 20.529761 0.0007256742 9.040252e-02 0.3122291065 3 49811092 49811272 181 - 1.051 1.211 0.577
ENSG00000182179 E036 27.739274 0.0173344589 7.874935e-01 0.9185150878 3 49811273 49811369 97 - 1.332 1.311 -0.072
ENSG00000182179 E037 24.451525 0.0042577383 6.372792e-01 0.8451611647 3 49811370 49811455 86 - 1.296 1.257 -0.138
ENSG00000182179 E038 23.153109 0.0025804636 1.628343e-01 0.4313800375 3 49811456 49811869 414 - 1.131 1.257 0.447
ENSG00000182179 E039 43.527676 0.0057056149 3.228828e-02 0.1700787241 3 49811870 49812016 147 - 1.617 1.480 -0.470
ENSG00000182179 E040 40.389763 0.0004629583 6.501745e-03 0.0597792562 3 49812109 49812206 98 - 1.605 1.443 -0.553
ENSG00000182179 E041 19.929003 0.0051821679 3.999570e-01 0.6836088978 3 49812408 49812447 40 - 1.243 1.167 -0.269
ENSG00000182179 E042 25.240870 0.0129027453 3.328362e-02 0.1734248883 3 49812448 49812543 96 - 1.425 1.244 -0.631
ENSG00000182179 E043 18.542833 0.0033487030 2.995153e-01 0.5924399288 3 49812648 49812738 91 - 1.229 1.135 -0.334
ENSG00000182179 E044 19.930687 0.0007337499 3.791387e-01 0.6659871313 3 49813062 49813168 107 - 1.243 1.167 -0.269
ENSG00000182179 E045 25.150429 0.0005388239 3.921074e-01 0.6771347511 3 49813249 49813383 135 - 1.214 1.284 0.246
ENSG00000182179 E046 31.283604 0.0004498158 5.992117e-01 0.8242886261 3 49813479 49813647 169 - 1.332 1.370 0.131
ENSG00000182179 E047 24.057036 0.0066401732 3.618595e-01 0.6512456437 3 49813732 49813953 222 - 1.320 1.244 -0.268

Help

Please Click HERE to learn more details about the results from DEXseq.