ENSG00000182606

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000341421 ENSG00000182606 No_inf pgKDN_inf TRAK1 protein_coding protein_coding 17.079 22.67341 15.14726 0.638219 0.394451 -0.581629 4.984898 5.865256 5.4514696 0.4780195 0.2968122 -0.1053625 0.29548333 0.258325 0.359200 0.100875 0.60545151 0.01893305 FALSE TRUE
ENST00000673621 ENSG00000182606 No_inf pgKDN_inf TRAK1 protein_coding protein_coding 17.079 22.67341 15.14726 0.638219 0.394451 -0.581629 1.406145 1.347941 0.8637496 0.8228731 0.8637496 -0.6361291 0.08728333 0.058300 0.053600 -0.004700 0.84826910 0.01893305 FALSE TRUE
MSTRG.19987.1 ENSG00000182606 No_inf pgKDN_inf TRAK1 protein_coding   17.079 22.67341 15.14726 0.638219 0.394451 -0.581629 2.813905 1.891064 4.0223068 0.7937197 0.8723026 1.0847980 0.18121667 0.085200 0.269900 0.184700 0.28798443 0.01893305 FALSE TRUE
MSTRG.19987.14 ENSG00000182606 No_inf pgKDN_inf TRAK1 protein_coding   17.079 22.67341 15.14726 0.638219 0.394451 -0.581629 6.636281 11.920293 4.1732826 0.5298937 0.1792461 -1.5119221 0.36151667 0.525175 0.275275 -0.249900 0.01893305 0.01893305 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000182606 E001 1.5671162 0.0288724817 4.658058e-02 2.117920e-01 3 42013661 42013801 141 + 0.564 0.257 -1.721
ENSG00000182606 E002 6.5123327 0.0022043269 1.202824e-05 4.006985e-04 3 42013802 42014117 316 + 1.088 0.627 -1.799
ENSG00000182606 E003 4.6721592 0.0031354632 6.160789e-01 8.334654e-01 3 42087104 42087199 96 + 0.781 0.720 -0.247
ENSG00000182606 E004 2.7306319 0.0054982778 3.955360e-01 6.804184e-01 3 42087200 42087225 26 + 0.488 0.606 0.548
ENSG00000182606 E005 7.1291925 0.0274733893 7.466545e-01 8.997490e-01 3 42087226 42087400 175 + 0.925 0.885 -0.151
ENSG00000182606 E006 0.4985363 0.0152333279 5.333470e-01   3 42091357 42091560 204 + 0.113 0.206 1.034
ENSG00000182606 E007 10.7938095 0.0026173846 1.268008e-01 3.774563e-01 3 42125420 42125614 195 + 1.138 1.004 -0.486
ENSG00000182606 E008 0.0000000       3 42149235 42149358 124 +      
ENSG00000182606 E009 0.0000000       3 42149359 42149599 241 +      
ENSG00000182606 E010 0.0000000       3 42151335 42151432 98 +      
ENSG00000182606 E011 0.2530140 0.2276190778 4.555706e-01   3 42160169 42160211 43 + 0.000 0.147 11.371
ENSG00000182606 E012 0.2530140 0.2276190778 4.555706e-01   3 42160212 42160473 262 + 0.000 0.147 11.371
ENSG00000182606 E013 5.2740487 0.0085349113 3.007205e-01 5.936471e-01 3 42176814 42176890 77 + 0.859 0.736 -0.484
ENSG00000182606 E014 6.9505695 0.0021913704 1.983272e-02 1.262729e-01 3 42184685 42184801 117 + 1.020 0.782 -0.908
ENSG00000182606 E015 0.1265070 0.0122849373 7.896635e-01   3 42184802 42184923 122 + 0.000 0.080 10.912
ENSG00000182606 E016 8.8798675 0.0074412119 2.960941e-03 3.422533e-02 3 42188045 42188145 101 + 1.138 0.849 -1.071
ENSG00000182606 E017 8.5013230 0.0255272620 3.358951e-03 3.760586e-02 3 42189016 42189124 109 + 1.138 0.810 -1.223
ENSG00000182606 E018 5.4960957 0.0079821023 9.904966e-02 3.285452e-01 3 42191558 42191636 79 + 0.909 0.720 -0.744
ENSG00000182606 E019 1.9855345 0.0071473749 4.401213e-01 7.159123e-01 3 42193075 42193076 2 + 0.395 0.508 0.586
ENSG00000182606 E020 9.2794258 0.0017054510 2.052238e-02 1.290190e-01 3 42193077 42193205 129 + 1.119 0.907 -0.780
ENSG00000182606 E021 6.3703433 0.0022312544 1.781802e-01 4.529443e-01 3 42193824 42193898 75 + 0.940 0.796 -0.551
ENSG00000182606 E022 10.0079386 0.0016332795 6.586452e-01 8.573483e-01 3 42194804 42194941 138 + 1.008 1.046 0.138
ENSG00000182606 E023 10.3952830 0.0012704546 3.508094e-01 6.410922e-01 3 42199177 42199253 77 + 0.995 1.076 0.297
ENSG00000182606 E024 21.2997389 0.0007527205 5.727311e-01 8.085245e-01 3 42200818 42201054 237 + 1.360 1.323 -0.132
ENSG00000182606 E025 20.6749793 0.0006755431 4.289677e-03 4.459191e-02 3 42202436 42202752 317 + 1.428 1.245 -0.637
ENSG00000182606 E026 1.9311157 0.0075123524 2.519518e-02 1.461315e-01 3 42202753 42204189 1437 + 0.629 0.303 -1.689
ENSG00000182606 E027 8.2064998 0.0085814852 1.186541e-01 3.639382e-01 3 42209767 42209922 156 + 1.044 0.885 -0.595
ENSG00000182606 E028 3.6945546 0.0244372834 7.907933e-01 9.198666e-01 3 42209923 42209985 63 + 0.686 0.647 -0.164
ENSG00000182606 E029 90.8870287 0.0009370323 4.800119e-02 2.155617e-01 3 42209986 42212623 2638 + 1.989 1.927 -0.210
ENSG00000182606 E030 2.3566758 0.0062202738 4.169383e-01 6.967142e-01 3 42217164 42217315 152 + 0.444 0.560 0.564
ENSG00000182606 E031 2.8848901 0.0049944412 1.717041e-02 1.146266e-01 3 42219330 42219390 61 + 0.340 0.685 1.697
ENSG00000182606 E032 5.8479640 0.0024727057 6.446233e-02 2.558286e-01 3 42219494 42219596 103 + 0.686 0.896 0.836
ENSG00000182606 E033 0.4997349 0.0247748651 5.355442e-01   3 42220499 42220591 93 + 0.113 0.206 1.034
ENSG00000182606 E034 205.9184048 0.0001253520 4.062499e-16 7.634384e-14 3 42222942 42225890 2949 + 2.216 2.353 0.455

Help

Please Click HERE to learn more details about the results from DEXseq.