ENSG00000182670

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000418766 ENSG00000182670 No_inf pgKDN_inf TTC3 protein_coding protein_coding 21.89156 17.65195 24.62495 0.5805997 0.7626296 0.4800616 0.6806632 0.000000 1.441799 0.0000000 0.4670652 7.18169768 0.02752500 0.000000 0.058850 0.058850 0.01842269 0.01842269 FALSE  
ENST00000492275 ENSG00000182670 No_inf pgKDN_inf TTC3 protein_coding protein_coding 21.89156 17.65195 24.62495 0.5805997 0.7626296 0.4800616 5.5171595 2.539909 8.216325 0.9754531 0.8061576 1.68980207 0.24441667 0.140825 0.336400 0.195575 0.40677771 0.01842269 FALSE  
MSTRG.18817.25 ENSG00000182670 No_inf pgKDN_inf TTC3 protein_coding   21.89156 17.65195 24.62495 0.5805997 0.7626296 0.4800616 1.4211546 1.312038 1.998435 0.6583926 1.4936319 0.60330854 0.06640833 0.076850 0.082725 0.005875 0.86524003 0.01842269 FALSE  
MSTRG.18817.27 ENSG00000182670 No_inf pgKDN_inf TTC3 protein_coding   21.89156 17.65195 24.62495 0.5805997 0.7626296 0.4800616 7.4965091 7.483007 7.572455 1.1962347 2.5290713 0.01712027 0.34838333 0.420425 0.304150 -0.116275 0.83405099 0.01842269 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000182670 E001 0.2533610 0.0160386575 0.158985474   21 37073226 37073253 28 + 0.000 0.195 10.773
ENSG00000182670 E002 0.3806233 0.0158276565 0.058818615   21 37073254 37073257 4 + 0.000 0.267 13.938
ENSG00000182670 E003 0.5078857 0.0156702345 0.022319661 0.13588248 21 37073258 37073266 9 + 0.000 0.329 14.312
ENSG00000182670 E004 0.7452269 0.0136962089 0.245827747 0.53649794 21 37073267 37073273 7 + 0.153 0.329 1.418
ENSG00000182670 E005 0.9993432 0.0147933317 0.069081519 0.26558148 21 37073274 37073276 3 + 0.153 0.431 2.003
ENSG00000182670 E006 0.9993432 0.0147933317 0.069081519 0.26558148 21 37073277 37073280 4 + 0.153 0.431 2.003
ENSG00000182670 E007 1.2442362 0.0252563261 0.094193170 0.31938982 21 37073281 37073289 9 + 0.214 0.474 1.641
ENSG00000182670 E008 2.9399619 0.0046121616 0.489035390 0.75210684 21 37073290 37073347 58 + 0.549 0.643 0.418
ENSG00000182670 E009 2.8025324 0.0050194406 0.955425108 0.98923455 21 37073348 37073364 17 + 0.574 0.583 0.040
ENSG00000182670 E010 0.9638418 0.0122319409 0.296451356 0.58957954 21 37073365 37073473 109 + 0.356 0.195 -1.167
ENSG00000182670 E011 4.0139210 0.0056167273 0.958691136 0.99019773 21 37081596 37083625 2030 + 0.701 0.696 -0.022
ENSG00000182670 E012 1.8615106 0.0315326756 0.080341482 0.29100382 21 37083626 37084166 541 + 0.314 0.583 1.418
ENSG00000182670 E013 1.0723748 0.0136761171 0.039717488 0.19314065 21 37084167 37084331 165 + 0.430 0.108 -2.582
ENSG00000182670 E014 2.2225211 0.0218389085 0.139253081 0.39673478 21 37085790 37087246 1457 + 0.395 0.614 1.070
ENSG00000182670 E015 3.1380955 0.0048134831 0.209815625 0.49423868 21 37087247 37087401 155 + 0.682 0.514 -0.752
ENSG00000182670 E016 2.5470315 0.0054731277 0.659053707 0.85761099 21 37087833 37087875 43 + 0.574 0.514 -0.282
ENSG00000182670 E017 0.2459004 0.0163885467 0.824228150   21 37087876 37088195 320 + 0.083 0.108 0.418
ENSG00000182670 E018 3.9963780 0.0149209535 0.468248902 0.73648536 21 37088196 37088346 151 + 0.736 0.643 -0.389
ENSG00000182670 E019 2.4259670 0.1672839156 0.889831797 0.96327959 21 37088799 37088886 88 + 0.549 0.514 -0.166
ENSG00000182670 E020 2.1842270 0.0174600566 0.738572161 0.89633786 21 37090233 37090286 54 + 0.522 0.474 -0.234
ENSG00000182670 E021 0.1176306 0.0118056868 0.715576151   21 37090542 37090589 48 + 0.083 0.000 -12.796
ENSG00000182670 E022 1.3252397 0.0229064799 0.297269313 0.59044425 21 37091293 37091326 34 + 0.430 0.267 -0.997
ENSG00000182670 E023 1.0722257 0.0162077917 0.040206139 0.19437773 21 37091327 37091393 67 + 0.430 0.108 -2.582
ENSG00000182670 E024 0.1176306 0.0118056868 0.715576151   21 37091394 37091413 20 + 0.083 0.000 -12.796
ENSG00000182670 E025 0.0000000       21 37091414 37091626 213 +      
ENSG00000182670 E026 0.2539903 0.0160767019 0.158903410   21 37093309 37093402 94 + 0.000 0.195 13.400
ENSG00000182670 E027 1.4480339 0.0563518779 0.543784297 0.79053921 21 37094005 37094090 86 + 0.430 0.329 -0.581
ENSG00000182670 E028 2.7906504 0.1274518758 0.885009955 0.96131239 21 37095350 37095444 95 + 0.598 0.550 -0.218
ENSG00000182670 E029 0.0000000       21 37095445 37095490 46 +      
ENSG00000182670 E030 2.5595324 0.0189999608 0.999544700 1.00000000 21 37096581 37096643 63 + 0.549 0.550 0.003
ENSG00000182670 E031 0.2357071 0.0156718027 0.356924888   21 37096644 37096885 242 + 0.153 0.000 -13.713
ENSG00000182670 E032 4.1406429 0.0035694871 0.841534138 0.94311277 21 37097915 37099098 1184 + 0.719 0.696 -0.096
ENSG00000182670 E033 1.2345462 0.0106722899 0.283380973 0.57712002 21 37107738 37108391 654 + 0.266 0.431 1.003
ENSG00000182670 E034 4.1260444 0.0262897319 0.615636356 0.83319694 21 37108392 37108446 55 + 0.736 0.670 -0.273
ENSG00000182670 E035 0.0000000       21 37121237 37121342 106 +      
ENSG00000182670 E036 9.6338193 0.0014381487 0.004646690 0.04697556 21 37121817 37121979 163 + 1.123 0.859 -0.980
ENSG00000182670 E037 6.3763392 0.0023326698 0.005772339 0.05488810 21 37122983 37123028 46 + 0.976 0.670 -1.203
ENSG00000182670 E038 9.3680990 0.0560415993 0.619997774 0.83564147 21 37124619 37124742 124 + 1.040 0.977 -0.230
ENSG00000182670 E039 6.3342434 0.0021265106 0.933229412 0.98068730 21 37126080 37126143 64 + 0.866 0.859 -0.029
ENSG00000182670 E040 5.9373855 0.0159660502 0.423120923 0.70236693 21 37129003 37129063 61 + 0.879 0.785 -0.366
ENSG00000182670 E041 6.8097120 0.0021258833 0.784641240 0.91686543 21 37132682 37132766 85 + 0.902 0.875 -0.103
ENSG00000182670 E042 7.0947846 0.0019042549 0.005636805 0.05401838 21 37135380 37135514 135 + 1.014 0.720 -1.134
ENSG00000182670 E043 7.3714376 0.0018558549 0.061716350 0.24963324 21 37138634 37138714 81 + 0.995 0.805 -0.726
ENSG00000182670 E044 5.8275912 0.0024154924 0.452679685 0.72574592 21 37140561 37140673 113 + 0.866 0.785 -0.319
ENSG00000182670 E045 1.5981121 0.0086134655 0.433717716 0.71106179 21 37144525 37144559 35 + 0.356 0.474 0.641
ENSG00000182670 E046 7.1939349 0.0019644543 0.855966723 0.94936973 21 37144560 37144645 86 + 0.902 0.922 0.074
ENSG00000182670 E047 10.4405690 0.0070274390 0.429723797 0.70786645 21 37147481 37147603 123 + 1.087 1.014 -0.265
ENSG00000182670 E048 9.0875448 0.0198352942 0.222176052 0.50947325 21 37148546 37148647 102 + 1.056 0.922 -0.496
ENSG00000182670 E049 6.2830477 0.0026806253 0.075937409 0.28154160 21 37150078 37150170 93 + 0.936 0.742 -0.752
ENSG00000182670 E050 2.6595343 0.0098044810 0.297979867 0.59094907 21 37150820 37150884 65 + 0.621 0.474 -0.681
ENSG00000182670 E051 9.4842571 0.0023664336 0.577701220 0.81131491 21 37151893 37152029 137 + 1.039 0.990 -0.182
ENSG00000182670 E052 21.1922004 0.0083823390 0.933549241 0.98084113 21 37152951 37153236 286 + 1.346 1.341 -0.016
ENSG00000182670 E053 7.2624030 0.0023780789 0.217871356 0.50429078 21 37153237 37153277 41 + 0.967 0.841 -0.475
ENSG00000182670 E054 0.1265070 0.0123101331 0.401980225   21 37153278 37153323 46 + 0.000 0.108 12.471
ENSG00000182670 E055 0.0000000       21 37154981 37155026 46 +      
ENSG00000182670 E056 8.9385489 0.0015814077 0.038314072 0.18899480 21 37156655 37156740 86 + 1.072 0.875 -0.731
ENSG00000182670 E057 16.4834757 0.0008378509 0.071641114 0.27127660 21 37156741 37156906 166 + 1.293 1.164 -0.456
ENSG00000182670 E058 1.9689091 0.0069488305 0.289436692 0.58306796 21 37157161 37157214 54 + 0.395 0.550 0.781
ENSG00000182670 E059 2.6727549 0.0590135785 0.602672031 0.82660309 21 37158131 37158203 73 + 0.598 0.514 -0.390
ENSG00000182670 E060 1.4875562 0.0089243948 0.101463756 0.33264520 21 37159519 37159698 180 + 0.266 0.514 1.418
ENSG00000182670 E061 7.9971142 0.0017280898 0.185797432 0.46371140 21 37159699 37159745 47 + 1.005 0.876 -0.485
ENSG00000182670 E062 11.3985182 0.0013388202 0.187862149 0.46610347 21 37160802 37160858 57 + 1.137 1.026 -0.401
ENSG00000182670 E063 11.1749256 0.0012245747 0.467361009 0.73578024 21 37161990 37162063 74 + 1.109 1.049 -0.219
ENSG00000182670 E064 16.7676038 0.0212658756 0.571636382 0.80780149 21 37164051 37164215 165 + 1.269 1.219 -0.175
ENSG00000182670 E065 92.9096822 0.0002830947 0.483485348 0.74798631 21 37165550 37166615 1066 + 1.960 1.983 0.076
ENSG00000182670 E066 10.0258954 0.0114252484 0.442245205 0.71761396 21 37167555 37167620 66 + 1.005 1.080 0.278
ENSG00000182670 E067 19.8413288 0.0006833888 0.761936026 0.90715800 21 37172595 37172744 150 + 1.325 1.306 -0.064
ENSG00000182670 E068 22.3177975 0.0006146818 0.100956730 0.33172903 21 37182774 37182913 140 + 1.408 1.306 -0.352
ENSG00000182670 E069 17.8609675 0.0008414526 0.220468552 0.50740149 21 37185706 37185774 69 + 1.233 1.318 0.300
ENSG00000182670 E070 0.8705354 0.0124448597 0.130746737 0.38351523 21 37185775 37186079 305 + 0.153 0.383 1.740
ENSG00000182670 E071 11.8737870 0.0061791182 0.298592891 0.59163106 21 37187049 37187145 97 + 1.064 1.155 0.329
ENSG00000182670 E072 0.0000000       21 37188495 37188595 101 +      
ENSG00000182670 E073 5.7507067 0.0024392019 0.408960557 0.69119986 21 37191334 37191424 91 + 0.784 0.876 0.357
ENSG00000182670 E074 7.8254805 0.0018007471 0.376018902 0.66322858 21 37192112 37192213 102 + 0.902 0.990 0.328
ENSG00000182670 E075 0.1186381 0.0118253795 0.715659643   21 37194453 37194698 246 + 0.083 0.000 -12.796
ENSG00000182670 E076 0.0000000       21 37194966 37195017 52 +      
ENSG00000182670 E077 33.4134732 0.0129860356 0.584385388 0.81526750 21 37195675 37196036 362 + 1.518 1.554 0.123
ENSG00000182670 E078 22.5476752 0.0063963564 0.814987179 0.93239552 21 37197570 37197696 127 + 1.362 1.379 0.058
ENSG00000182670 E079 22.4770452 0.0052095749 0.391197324 0.67637217 21 37197882 37198016 135 + 1.393 1.336 -0.199
ENSG00000182670 E080 7.2028071 0.0023508230 0.660995465 0.85849882 21 37198017 37198025 9 + 0.891 0.936 0.173
ENSG00000182670 E081 18.7562239 0.0007737937 0.863497761 0.95278958 21 37200232 37200324 93 + 1.298 1.288 -0.035
ENSG00000182670 E082 19.3047426 0.0007034960 0.318309059 0.61107997 21 37201440 37201570 131 + 1.274 1.341 0.235
ENSG00000182670 E083 92.9405605 0.0001747939 0.041343250 0.19745036 21 37201571 37202283 713 + 1.941 2.004 0.209
ENSG00000182670 E084 104.8564689 0.0009320452 0.000756005 0.01209563 21 37202284 37203112 829 + 1.974 2.075 0.341

Help

Please Click HERE to learn more details about the results from DEXseq.