ENSG00000182934

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000332118 ENSG00000182934 No_inf pgKDN_inf SRPRA protein_coding protein_coding 140.4561 94.06794 167.3008 1.303239 1.676334 0.830602 131.1995 80.77653 160.5707 0.9788993 1.706402 0.9911118 0.923325 0.858775 0.9598 0.101025 1.868352e-13 1.868352e-13 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000182934 E001 428.6656320 5.842018e-05 5.035707e-04 8.793541e-03 11 126262938 126263473 536 - 2.602 2.650 0.160
ENSG00000182934 E002 364.4984165 2.192834e-04 1.809782e-03 2.364553e-02 11 126263474 126263840 367 - 2.531 2.580 0.165
ENSG00000182934 E003 225.9552498 1.113590e-04 8.947357e-02 3.106785e-01 11 126263841 126264044 204 - 2.330 2.364 0.113
ENSG00000182934 E004 5.4080705 2.557278e-03 1.605933e-02 1.098982e-01 11 126264045 126264190 146 - 0.673 0.942 1.063
ENSG00000182934 E005 107.3356210 1.547531e-04 8.144129e-01 9.322441e-01 11 126264191 126264289 99 - 2.020 2.027 0.022
ENSG00000182934 E006 138.6541302 1.531805e-04 6.517968e-01 8.533477e-01 11 126264376 126264539 164 - 2.128 2.140 0.038
ENSG00000182934 E007 4.5968298 3.109957e-03 3.807913e-05 1.057549e-03 11 126264540 126264755 216 - 0.483 0.973 2.041
ENSG00000182934 E008 60.5219175 2.504075e-03 3.428793e-01 6.342726e-01 11 126264959 126265020 62 - 1.793 1.750 -0.144
ENSG00000182934 E009 72.8507292 2.298711e-04 1.878261e-01 4.660754e-01 11 126265021 126265079 59 - 1.874 1.825 -0.164
ENSG00000182934 E010 90.4081885 1.712839e-04 1.378059e-01 3.950394e-01 11 126265080 126265172 93 - 1.967 1.918 -0.165
ENSG00000182934 E011 120.9710107 7.622162e-04 1.469259e-01 4.080021e-01 11 126265268 126265440 173 - 2.090 2.046 -0.148
ENSG00000182934 E012 4.3574373 2.215072e-02 3.004184e-05 8.664581e-04 11 126265441 126265657 217 - 0.426 0.973 2.331
ENSG00000182934 E013 93.5010316 3.335552e-04 3.798741e-02 1.880508e-01 11 126265737 126265823 87 - 1.988 1.919 -0.231
ENSG00000182934 E014 110.0474488 1.811491e-03 5.941356e-03 5.608981e-02 11 126265963 126266081 119 - 2.067 1.972 -0.320
ENSG00000182934 E015 80.5014658 1.825949e-04 9.300460e-01 9.794978e-01 11 126266187 126266278 92 - 1.900 1.897 -0.011
ENSG00000182934 E016 0.8805177 1.243302e-01 1.654214e-02 1.119849e-01 11 126266279 126266401 123 - 0.074 0.468 3.385
ENSG00000182934 E017 119.6603856 1.740609e-03 5.508670e-01 7.949074e-01 11 126266476 126266629 154 - 2.062 2.081 0.065
ENSG00000182934 E018 135.1048662 1.247316e-04 5.072897e-01 7.657476e-01 11 126266763 126266922 160 - 2.128 2.110 -0.060
ENSG00000182934 E019 2.3318795 6.064709e-03 1.572212e-01 4.237877e-01 11 126267174 126267174 1 - 0.426 0.626 0.952
ENSG00000182934 E020 102.3557894 1.508821e-04 6.568899e-02 2.582079e-01 11 126267175 126267335 161 - 2.023 1.966 -0.192
ENSG00000182934 E021 4.2619360 3.328958e-03 5.530475e-08 3.424577e-06 11 126267336 126267548 213 - 0.325 1.002 3.023
ENSG00000182934 E022 41.7351417 6.992722e-04 1.272953e-01 3.783713e-01 11 126267549 126267577 29 - 1.646 1.570 -0.256
ENSG00000182934 E023 87.6606705 1.367501e-03 1.634790e-03 2.186233e-02 11 126267578 126267712 135 - 1.976 1.860 -0.392
ENSG00000182934 E024 58.8694397 4.529469e-03 1.251230e-01 3.749727e-01 11 126268003 126268086 84 - 1.792 1.716 -0.258
ENSG00000182934 E025 55.7642102 4.792186e-04 7.962536e-03 6.894388e-02 11 126268688 126268867 180 - 1.782 1.668 -0.386
ENSG00000182934 E026 5.4297452 1.473095e-02 4.848013e-01 7.488015e-01 11 126268868 126268982 115 - 0.829 0.742 -0.346
ENSG00000182934 E027 0.1272623 1.235670e-02 2.992427e-01   11 126268986 126269144 159 - 0.000 0.122 8.906

Help

Please Click HERE to learn more details about the results from DEXseq.