ENSG00000183401

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000458408 ENSG00000183401 No_inf pgKDN_inf CCDC159 protein_coding protein_coding 10.95738 15.18355 9.044725 0.7243592 1.970928 -0.7467167 2.2481455 3.2337195 1.2553515 1.2235433 0.5557813 -1.3581109 0.21545833 0.202450 0.180400 -0.022050 0.95664282 0.00892933 FALSE TRUE
ENST00000587531 ENSG00000183401 No_inf pgKDN_inf CCDC159 protein_coding protein_coding 10.95738 15.18355 9.044725 0.7243592 1.970928 -0.7467167 0.4183412 1.2550237 0.0000000 1.2550237 0.0000000 -6.9830206 0.02715000 0.081450 0.000000 -0.081450 0.94296446 0.00892933 FALSE FALSE
ENST00000587868 ENSG00000183401 No_inf pgKDN_inf CCDC159 protein_coding retained_intron 10.95738 15.18355 9.044725 0.7243592 1.970928 -0.7467167 0.9283781 1.8699405 0.4984278 1.1149072 0.4984278 -1.8865722 0.09295000 0.129600 0.098325 -0.031275 0.84208527 0.00892933   FALSE
ENST00000588464 ENSG00000183401 No_inf pgKDN_inf CCDC159 protein_coding retained_intron 10.95738 15.18355 9.044725 0.7243592 1.970928 -0.7467167 0.9795538 1.2743034 1.3706993 0.8870229 0.7919315 0.1044131 0.09235833 0.081600 0.161325 0.079725 0.90760013 0.00892933 FALSE TRUE
ENST00000588790 ENSG00000183401 No_inf pgKDN_inf CCDC159 protein_coding protein_coding 10.95738 15.18355 9.044725 0.7243592 1.970928 -0.7467167 0.3089288 0.9267865 0.0000000 0.9267865 0.0000000 -6.5496484 0.02338333 0.070150 0.000000 -0.070150 0.95593901 0.00892933 FALSE TRUE
ENST00000588821 ENSG00000183401 No_inf pgKDN_inf CCDC159 protein_coding retained_intron 10.95738 15.18355 9.044725 0.7243592 1.970928 -0.7467167 0.4958390 1.4142120 0.0000000 0.3758709 0.0000000 -7.1540201 0.03352500 0.095350 0.000000 -0.095350 0.04807343 0.00892933 FALSE TRUE
ENST00000589016 ENSG00000183401 No_inf pgKDN_inf CCDC159 protein_coding retained_intron 10.95738 15.18355 9.044725 0.7243592 1.970928 -0.7467167 0.5070145 0.0000000 1.3049847 0.0000000 0.4910486 7.0389023 0.07410833 0.000000 0.181450 0.181450 0.00892933 0.00892933 FALSE TRUE
ENST00000589022 ENSG00000183401 No_inf pgKDN_inf CCDC159 protein_coding retained_intron 10.95738 15.18355 9.044725 0.7243592 1.970928 -0.7467167 1.0575627 1.7369357 0.3964227 1.1423131 0.3964227 -2.1037736 0.07441667 0.110000 0.032975 -0.077025 0.84830076 0.00892933   FALSE
ENST00000590919 ENSG00000183401 No_inf pgKDN_inf CCDC159 protein_coding nonsense_mediated_decay 10.95738 15.18355 9.044725 0.7243592 1.970928 -0.7467167 1.0672167 0.0000000 2.0556377 0.0000000 2.0556377 7.6904434 0.08068333 0.000000 0.160375 0.160375 0.79999837 0.00892933 FALSE FALSE
ENST00000591260 ENSG00000183401 No_inf pgKDN_inf CCDC159 protein_coding protein_coding 10.95738 15.18355 9.044725 0.7243592 1.970928 -0.7467167 0.5178819 0.0000000 1.2725417 0.0000000 1.2725417 7.0028619 0.04195833 0.000000 0.105850 0.105850 0.79208181 0.00892933 FALSE FALSE
ENST00000591691 ENSG00000183401 No_inf pgKDN_inf CCDC159 protein_coding protein_coding 10.95738 15.18355 9.044725 0.7243592 1.970928 -0.7467167 1.2788027 1.6225890 0.7043286 0.6750118 0.4068563 -1.1925018 0.11085000 0.106200 0.056725 -0.049475 0.85998162 0.00892933 FALSE TRUE
MSTRG.14559.6 ENSG00000183401 No_inf pgKDN_inf CCDC159 protein_coding   10.95738 15.18355 9.044725 0.7243592 1.970928 -0.7467167 0.3376767 0.3680985 0.0000000 0.3680985 0.0000000 -5.2406901 0.06643333 0.027875 0.000000 -0.027875 0.94958874 0.00892933 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000183401 E001 0.0000000       19 11344684 11344694 11 +      
ENSG00000183401 E002 0.0000000       19 11344695 11344755 61 +      
ENSG00000183401 E003 0.0000000       19 11345180 11345300 121 +      
ENSG00000183401 E004 0.0000000       19 11345301 11345381 81 +      
ENSG00000183401 E005 0.0000000       19 11345962 11346017 56 +      
ENSG00000183401 E006 0.0000000       19 11346018 11346203 186 +      
ENSG00000183401 E007 0.0000000       19 11346204 11346466 263 +      
ENSG00000183401 E008 0.0000000       19 11346483 11346504 22 +      
ENSG00000183401 E009 0.0000000       19 11346505 11346518 14 +      
ENSG00000183401 E010 0.1268540 0.012604244 1.000000000   19 11346519 11346530 12 + 0.000 0.063 9.020
ENSG00000183401 E011 0.1268540 0.012604244 1.000000000   19 11346531 11346532 2 + 0.000 0.063 10.936
ENSG00000183401 E012 0.1268540 0.012604244 1.000000000   19 11346533 11346539 7 + 0.000 0.063 10.936
ENSG00000183401 E013 0.2541163 0.016318637 0.823632371   19 11346540 11346555 16 + 0.000 0.118 11.803
ENSG00000183401 E014 0.3806233 0.016197678 0.450299961   19 11346556 11346564 9 + 0.000 0.166 12.295
ENSG00000183401 E015 0.3806233 0.016197678 0.450299961   19 11346565 11346571 7 + 0.000 0.166 12.295
ENSG00000183401 E016 0.4993265 0.015559347 1.000000000   19 11346572 11346580 9 + 0.142 0.166 0.276
ENSG00000183401 E017 1.3622518 0.010763936 0.588622023 0.81751375 19 11346581 11346624 44 + 0.405 0.320 -0.502
ENSG00000183401 E018 1.3421434 0.011980083 0.075811209 0.28133919 19 11346625 11346627 3 + 0.520 0.250 -1.572
ENSG00000183401 E019 0.5884183 0.107278424 0.001917489 0.02477074 19 11346628 11346634 7 + 0.466 0.000 -15.510
ENSG00000183401 E020 0.3717172 0.212315304 0.858841295   19 11348966 11349083 118 + 0.142 0.118 -0.310
ENSG00000183401 E021 0.8799150 0.013378083 0.385503656 0.67150322 19 11349084 11349575 492 + 0.142 0.286 1.276
ENSG00000183401 E022 0.2447669 0.016662446 0.472151427   19 11349576 11349653 78 + 0.142 0.063 -1.309
ENSG00000183401 E023 1.4775566 0.010979413 0.340907227 0.63255549 19 11349654 11349662 9 + 0.466 0.320 -0.824
ENSG00000183401 E024 2.4855544 0.006697812 0.902361031 0.96876684 19 11349663 11349687 25 + 0.520 0.502 -0.087
ENSG00000183401 E025 0.0000000       19 11349688 11349693 6 +      
ENSG00000183401 E026 4.3463381 0.020438269 0.723885503 0.88905681 19 11349938 11350026 89 + 0.719 0.675 -0.184
ENSG00000183401 E027 4.2186289 0.040655844 0.625878679 0.83911107 19 11350118 11350199 82 + 0.719 0.661 -0.245
ENSG00000183401 E028 4.6067440 0.003983176 0.817519740 0.93361564 19 11350808 11350884 77 + 0.686 0.716 0.124
ENSG00000183401 E029 4.2494700 0.004093151 0.489181889 0.75213912 19 11350885 11351003 119 + 0.611 0.703 0.391
ENSG00000183401 E030 2.2253565 0.007288086 0.349847787 0.64007227 19 11351004 11351486 483 + 0.568 0.433 -0.657
ENSG00000183401 E031 0.0000000       19 11351748 11351792 45 +      
ENSG00000183401 E032 0.5078857 0.016088993 0.274810989 0.56824966 19 11351793 11351905 113 + 0.000 0.210 12.639
ENSG00000183401 E033 1.7609024 0.011400940 0.202823224 0.48540414 19 11351906 11351931 26 + 0.248 0.457 1.276
ENSG00000183401 E034 2.3469856 0.007061885 0.442615273 0.71791806 19 11351932 11351961 30 + 0.568 0.457 -0.531
ENSG00000183401 E035 2.2184298 0.119673407 0.479292431 0.74507759 19 11351962 11351973 12 + 0.568 0.433 -0.656
ENSG00000183401 E036 0.1268540 0.012604244 1.000000000   19 11351974 11351997 24 + 0.000 0.063 10.936
ENSG00000183401 E037 0.2537079 0.193335593 0.900830146   19 11351998 11352056 59 + 0.000 0.118 11.772
ENSG00000183401 E038 5.5674959 0.062928829 0.448279180 0.72237457 19 11352057 11352133 77 + 0.855 0.741 -0.450
ENSG00000183401 E039 0.1272623 0.012642645 1.000000000   19 11352134 11352499 366 + 0.000 0.063 10.936
ENSG00000183401 E040 0.1265070 0.012985458 1.000000000   19 11353378 11353450 73 + 0.000 0.063 10.936
ENSG00000183401 E041 6.1146649 0.002406649 0.489375867 0.75230869 19 11353451 11353572 122 + 0.750 0.830 0.315
ENSG00000183401 E042 4.8898450 0.003260482 0.111761959 0.35116220 19 11353573 11353791 219 + 0.568 0.776 0.884
ENSG00000183401 E043 4.3745309 0.003511395 0.424877629 0.70399937 19 11353792 11353874 83 + 0.611 0.716 0.446
ENSG00000183401 E044 5.8167124 0.048647530 0.363567792 0.65241897 19 11354580 11354696 117 + 0.878 0.753 -0.491
ENSG00000183401 E045 2.1196548 0.008893592 0.625902742 0.83911107 19 11354697 11354872 176 + 0.405 0.480 0.391
ENSG00000183401 E046 1.7652147 0.196501648 0.107182551 0.34305280 19 11354873 11354944 72 + 0.141 0.480 2.391

Help

Please Click HERE to learn more details about the results from DEXseq.