ENSG00000183484

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000329797 ENSG00000183484 No_inf pgKDN_inf GPR132 protein_coding protein_coding 24.62701 13.40992 26.84931 0.09096854 0.4474233 1.001046 4.2895928 1.1818456 6.3369881 0.5618819 0.8528402 2.4128748 0.16290000 0.087900 0.237750 0.149850 0.35238350 0.03398323 FALSE TRUE
ENST00000392585 ENSG00000183484 No_inf pgKDN_inf GPR132 protein_coding protein_coding 24.62701 13.40992 26.84931 0.09096854 0.4474233 1.001046 10.8633998 3.3951287 10.1684208 1.2179240 3.4036329 1.5797325 0.39448333 0.251900 0.373500 0.121600 0.87441833 0.03398323 FALSE TRUE
ENST00000549990 ENSG00000183484 No_inf pgKDN_inf GPR132 protein_coding protein_coding 24.62701 13.40992 26.84931 0.09096854 0.4474233 1.001046 0.9872877 1.7226454 0.3253002 0.2927654 0.3253002 -2.3694510 0.05549167 0.128425 0.011750 -0.116675 0.03398323 0.03398323   FALSE
MSTRG.9139.1 ENSG00000183484 No_inf pgKDN_inf GPR132 protein_coding   24.62701 13.40992 26.84931 0.09096854 0.4474233 1.001046 1.8062394 0.9052699 1.8901851 0.3483696 0.7713386 1.0538708 0.07233333 0.067625 0.070900 0.003275 1.00000000 0.03398323 FALSE TRUE
MSTRG.9139.2 ENSG00000183484 No_inf pgKDN_inf GPR132 protein_coding   24.62701 13.40992 26.84931 0.09096854 0.4474233 1.001046 5.4604217 5.1705369 7.3148678 0.9289212 2.3143791 0.4997011 0.26104167 0.386800 0.275475 -0.111325 0.77746790 0.03398323 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000183484 E001 1.7046256 0.0093416364 4.652903e-01 0.7343721952 14 105049076 105049394 319 - 0.377 0.488 0.586
ENSG00000183484 E002 0.7267188 0.0141631953 9.996743e-01 1.0000000000 14 105049395 105049396 2 - 0.228 0.229 0.001
ENSG00000183484 E003 0.7267188 0.0141631953 9.996743e-01 1.0000000000 14 105049397 105049399 3 - 0.228 0.229 0.001
ENSG00000183484 E004 102.6109797 0.0015893522 4.077953e-01 0.6902182482 14 105049400 105050359 960 - 2.003 1.980 -0.076
ENSG00000183484 E005 121.8915676 0.0004119154 6.160820e-01 0.8334654447 14 105050360 105051606 1247 - 2.065 2.077 0.041
ENSG00000183484 E006 46.5606997 0.0004127001 9.615950e-01 0.9916202530 14 105051607 105052102 496 - 1.658 1.656 -0.005
ENSG00000183484 E007 3.5382526 0.0044612208 2.039799e-01 0.4866392599 14 105053933 105054165 233 - 0.576 0.740 0.701
ENSG00000183484 E008 2.8965930 0.0049806078 6.616697e-01 0.8587567440 14 105055387 105055390 4 - 0.596 0.534 -0.280
ENSG00000183484 E009 26.5895479 0.0038665410 6.432503e-01 0.8486954621 14 105055391 105056166 776 - 1.431 1.402 -0.099
ENSG00000183484 E010 8.9314702 0.0017200314 6.758509e-01 0.8657865407 14 105057167 105057280 114 - 0.992 0.952 -0.148
ENSG00000183484 E011 1.6420734 0.0086239008 9.232637e-06 0.0003189962 14 105057281 105057496 216 - 0.069 0.712 4.584
ENSG00000183484 E012 1.2149697 0.0106960884 6.642274e-01 0.8603589193 14 105057888 105057937 50 - 0.309 0.377 0.416
ENSG00000183484 E013 0.7267564 0.0355747449 1.000000e+00 1.0000000000 14 105057938 105058027 90 - 0.228 0.229 0.000
ENSG00000183484 E014 2.6412605 0.0706562963 3.430633e-01 0.6344171435 14 105065379 105065445 67 - 0.596 0.436 -0.765

Help

Please Click HERE to learn more details about the results from DEXseq.