ENSG00000184009

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000573283 ENSG00000184009 No_inf pgKDN_inf ACTG1 protein_coding protein_coding 2059.166 1722.558 2270.459 7.111681 8.865151 0.3984291 1729.31286 1343.5621 1979.9297 17.775115 12.491312 0.5593827 0.83524167 0.780125 0.872075 0.09195 1.632169e-10 1.256234e-51 FALSE  
ENST00000576209 ENSG00000184009 No_inf pgKDN_inf ACTG1 protein_coding retained_intron 2059.166 1722.558 2270.459 7.111681 8.865151 0.3984291 46.66818 122.5902 0.0000 24.482318 0.000000 -13.5816739 0.02633333 0.071000 0.000000 -0.07100 1.256234e-51 1.256234e-51 FALSE  
ENST00000576544 ENSG00000184009 No_inf pgKDN_inf ACTG1 protein_coding nonsense_mediated_decay 2059.166 1722.558 2270.459 7.111681 8.865151 0.3984291 215.15028 185.2201 235.9713 8.608975 5.744234 0.3493535 0.10470000 0.107525 0.103925 -0.00360 9.227895e-01 1.256234e-51 TRUE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000184009 E001 0.7518671 1.440686e-01 9.503292e-02 3.207852e-01 17 81509413 81509912 500 - 0.089 0.365 2.535
ENSG00000184009 E002 0.1272623 1.232024e-02 4.617808e-01   17 81509913 81509970 58 - 0.000 0.102 10.591
ENSG00000184009 E003 24.1094139 1.395865e-03 3.329913e-01 6.250416e-01 17 81509971 81509975 5 - 1.371 1.429 0.200
ENSG00000184009 E004 33.8163962 5.254446e-04 1.092455e-01 3.469787e-01 17 81509976 81509976 1 - 1.501 1.582 0.277
ENSG00000184009 E005 39.4803806 4.760461e-04 3.472543e-02 1.780813e-01 17 81509977 81509977 1 - 1.556 1.656 0.340
ENSG00000184009 E006 212.4854532 1.316100e-04 5.788954e-06 2.132660e-04 17 81509978 81509988 11 - 2.281 2.376 0.316
ENSG00000184009 E007 217.2740172 1.836793e-04 4.856342e-06 1.838049e-04 17 81509989 81509991 3 - 2.290 2.386 0.319
ENSG00000184009 E008 270.8108622 1.327307e-04 1.768390e-04 3.783275e-03 17 81509992 81510004 13 - 2.399 2.469 0.231
ENSG00000184009 E009 275.8618212 9.795059e-05 7.603305e-05 1.888884e-03 17 81510005 81510007 3 - 2.406 2.478 0.240
ENSG00000184009 E010 3237.0582599 5.457124e-05 2.743281e-20 7.626604e-18 17 81510008 81510287 280 - 3.484 3.536 0.171
ENSG00000184009 E011 1294.9286344 3.264950e-04 3.889375e-09 2.983920e-07 17 81510288 81510329 42 - 3.080 3.144 0.212
ENSG00000184009 E012 1471.5198013 1.291008e-04 1.297108e-04 2.932030e-03 17 81510330 81510395 66 - 3.152 3.184 0.109
ENSG00000184009 E013 1683.1130895 5.133354e-05 8.130060e-02 2.930277e-01 17 81510396 81510478 83 - 3.220 3.232 0.039
ENSG00000184009 E014 3347.7698383 2.168279e-05 8.986826e-01 9.667228e-01 17 81510479 81510689 211 - 3.525 3.524 -0.004
ENSG00000184009 E015 2370.8582432 1.818969e-05 4.129277e-01 6.939255e-01 17 81510690 81510833 144 - 3.378 3.371 -0.023
ENSG00000184009 E016 2461.7950747 7.709052e-05 8.275778e-01 9.375831e-01 17 81510927 81511108 182 - 3.391 3.391 -0.001
ENSG00000184009 E017 14.4087296 1.206381e-03 1.104902e-02 8.580532e-02 17 81511109 81511187 79 - 1.084 1.277 0.687
ENSG00000184009 E018 3979.1303259 1.411690e-04 3.039760e-06 1.220415e-04 17 81511188 81511578 391 - 3.614 3.583 -0.104
ENSG00000184009 E019 1138.8997641 2.765900e-05 3.944784e-04 7.212135e-03 17 81511579 81511626 48 - 3.073 3.039 -0.113
ENSG00000184009 E020 23.9561489 5.806488e-04 1.561996e-05 4.999686e-04 17 81511627 81511762 136 - 1.251 1.514 0.912
ENSG00000184009 E021 12.6539902 7.523930e-03 6.030361e-05 1.553949e-03 17 81511763 81511803 41 - 0.929 1.283 1.278
ENSG00000184009 E022 14.0367184 9.556025e-04 4.903500e-07 2.432984e-05 17 81511804 81511902 99 - 0.941 1.339 1.431
ENSG00000184009 E023 918.9840439 3.332033e-05 9.780526e-04 1.475951e-02 17 81511903 81511926 24 - 2.980 2.945 -0.118
ENSG00000184009 E024 2384.3332773 2.636514e-05 1.108783e-07 6.411822e-06 17 81511927 81512115 189 - 3.394 3.359 -0.117
ENSG00000184009 E025 722.5775925 1.047611e-03 1.423419e-03 1.964449e-02 17 81512116 81512142 27 - 2.886 2.828 -0.193
ENSG00000184009 E026 8.5305229 1.688004e-03 7.524489e-01 9.024593e-01 17 81512143 81512150 8 - 0.994 0.963 -0.117
ENSG00000184009 E027 571.0807264 2.305867e-03 2.237334e-02 1.360410e-01 17 81512232 81512247 16 - 2.783 2.727 -0.186
ENSG00000184009 E028 1283.5182755 2.704794e-04 2.082608e-08 1.395322e-06 17 81512248 81512360 113 - 3.137 3.075 -0.207
ENSG00000184009 E029 4.9427108 7.855655e-03 4.643086e-02 2.114218e-01 17 81512361 81512463 103 - 0.644 0.880 0.951
ENSG00000184009 E030 3.0842522 4.431460e-02 2.328107e-01 5.214952e-01 17 81512464 81512600 137 - 0.515 0.695 0.799
ENSG00000184009 E031 3.5552574 3.978084e-03 5.562277e-01 7.986193e-01 17 81512601 81512605 5 - 0.621 0.695 0.314
ENSG00000184009 E032 3.9297146 1.812947e-02 4.653771e-01 7.344233e-01 17 81512606 81512614 9 - 0.644 0.739 0.395
ENSG00000184009 E033 21.3872455 7.029661e-04 8.611936e-01 9.518539e-01 17 81512615 81512733 119 - 1.345 1.354 0.033
ENSG00000184009 E034 569.0522754 4.647695e-04 5.934387e-03 5.604786e-02 17 81512734 81512794 61 - 2.777 2.732 -0.149
ENSG00000184009 E035 4.9521431 2.843018e-03 6.252490e-02 2.511676e-01 17 81512795 81512851 57 - 0.867 0.646 -0.893
ENSG00000184009 E036 0.4990093 3.006581e-02 2.551519e-01   17 81513627 81513672 46 - 0.089 0.253 1.799
ENSG00000184009 E037 0.1187032 1.183688e-02 6.256377e-01   17 81513673 81514113 441 - 0.089 0.000 -11.096
ENSG00000184009 E038 0.1186381 1.182646e-02 6.256437e-01   17 81514547 81514610 64 - 0.089 0.000 -11.096
ENSG00000184009 E039 0.1187032 1.183688e-02 6.256377e-01   17 81514611 81514640 30 - 0.089 0.000 -11.096
ENSG00000184009 E040 0.2362687 1.567669e-02 2.990753e-01   17 81523642 81523847 206 - 0.163 0.000 -11.933

Help

Please Click HERE to learn more details about the results from DEXseq.