ENSG00000184787

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000345496 ENSG00000184787 No_inf pgKDN_inf UBE2G2 protein_coding protein_coding 57.42037 52.53168 57.46643 1.736278 4.4167 0.1295081 23.219430 14.931680 31.066927 1.7505581 1.1663358 1.0565015 0.40586667 0.288350 0.546575 0.258225 0.01121482 0.01121482 FALSE TRUE
ENST00000462569 ENSG00000184787 No_inf pgKDN_inf UBE2G2 protein_coding retained_intron 57.42037 52.53168 57.46643 1.736278 4.4167 0.1295081 10.502916 11.203984 8.930648 0.1328642 1.2445178 -0.3268476 0.18315833 0.213900 0.153550 -0.060350 0.56660476 0.01121482   FALSE
ENST00000481546 ENSG00000184787 No_inf pgKDN_inf UBE2G2 protein_coding retained_intron 57.42037 52.53168 57.46643 1.736278 4.4167 0.1295081 5.571736 8.016615 4.821185 0.8429032 0.9591826 -0.7324145 0.09993333 0.153725 0.082275 -0.071450 0.40116661 0.01121482 FALSE TRUE
ENST00000497630 ENSG00000184787 No_inf pgKDN_inf UBE2G2 protein_coding protein_coding_CDS_not_defined 57.42037 52.53168 57.46643 1.736278 4.4167 0.1295081 3.211179 2.527644 0.000000 2.5276441 0.0000000 -7.9873459 0.05285000 0.044725 0.000000 -0.044725 0.84565122 0.01121482 FALSE TRUE
MSTRG.18888.2 ENSG00000184787 No_inf pgKDN_inf UBE2G2 protein_coding   57.42037 52.53168 57.46643 1.736278 4.4167 0.1295081 4.189072 4.688059 2.646683 0.7948270 0.5107050 -0.8224388 0.07277500 0.088750 0.047175 -0.041575 0.55149722 0.01121482 FALSE TRUE
MSTRG.18888.4 ENSG00000184787 No_inf pgKDN_inf UBE2G2 protein_coding   57.42037 52.53168 57.46643 1.736278 4.4167 0.1295081 7.168954 8.880957 5.779789 0.9838123 1.7361599 -0.6188279 0.12795000 0.167800 0.105625 -0.062175 0.61686701 0.01121482 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000184787 E001 0.6183120 0.0167716307 6.825531e-01 8.685848e-01 21 44768580 44769039 460 - 0.176 0.235 0.520
ENSG00000184787 E002 6.7071404 0.0081522044 3.141385e-01 6.072451e-01 21 44769040 44769089 50 - 0.943 0.829 -0.434
ENSG00000184787 E003 440.3364714 0.0009370323 4.429232e-03 4.552665e-02 21 44769090 44770930 1841 - 2.667 2.623 -0.146
ENSG00000184787 E004 27.9403825 0.0060060114 9.853807e-01 9.989951e-01 21 44770931 44770971 41 - 1.463 1.459 -0.014
ENSG00000184787 E005 80.4022375 0.0002025797 8.871693e-01 9.622979e-01 21 44770972 44771278 307 - 1.910 1.909 -0.004
ENSG00000184787 E006 26.5393584 0.0005768361 4.781433e-01 7.442262e-01 21 44771279 44771294 16 - 1.463 1.417 -0.158
ENSG00000184787 E007 81.2540391 0.0021036659 4.259342e-01 7.048154e-01 21 44771295 44771489 195 - 1.933 1.898 -0.117
ENSG00000184787 E008 21.7147387 0.0006672293 6.432296e-01 8.486955e-01 21 44773547 44773547 1 - 1.343 1.367 0.082
ENSG00000184787 E009 49.2476883 0.0012350109 1.297665e-01 3.821152e-01 21 44773548 44773687 140 - 1.737 1.665 -0.244
ENSG00000184787 E010 63.5701845 0.0002704473 4.979165e-09 3.729810e-07 21 44773688 44774530 843 - 1.682 1.898 0.729
ENSG00000184787 E011 7.9434760 0.0017913740 3.945561e-03 4.205388e-02 21 44774531 44774566 36 - 0.779 1.062 1.072
ENSG00000184787 E012 16.9980747 0.0008024900 2.608221e-05 7.720736e-04 21 44774567 44774720 154 - 1.071 1.371 1.063
ENSG00000184787 E013 8.3004624 0.0046689995 8.669320e-03 7.309224e-02 21 44774721 44774741 21 - 0.813 1.071 0.967
ENSG00000184787 E014 10.6150663 0.0012942886 4.517825e-02 2.077939e-01 21 44774742 44774820 79 - 0.967 1.136 0.618
ENSG00000184787 E015 68.8437238 0.0002816536 1.369468e-12 1.750258e-10 21 44774821 44776145 1325 - 1.691 1.945 0.858
ENSG00000184787 E016 18.2770888 0.0007817634 5.638723e-03 5.402716e-02 21 44776834 44777253 420 - 1.177 1.362 0.651
ENSG00000184787 E017 4.1719183 0.0035069024 8.054279e-01 9.279265e-01 21 44777254 44777298 45 - 0.699 0.725 0.105
ENSG00000184787 E018 33.2237666 0.0004122836 2.708301e-03 3.193474e-02 21 44777299 44777376 78 - 1.611 1.451 -0.545
ENSG00000184787 E019 22.3803207 0.0006903568 6.629642e-03 6.069651e-02 21 44777377 44777417 41 - 1.452 1.278 -0.604
ENSG00000184787 E020 0.4879956 0.0160918537 9.751559e-01   21 44779144 44779216 73 - 0.176 0.170 -0.065
ENSG00000184787 E021 0.0000000       21 44785666 44785791 126 -      
ENSG00000184787 E022 23.2760098 0.0015970111 5.353441e-05 1.410515e-03 21 44787920 44787965 46 - 1.502 1.243 -0.899
ENSG00000184787 E023 23.0458155 0.0043132528 3.602467e-04 6.753405e-03 21 44788060 44788095 36 - 1.492 1.249 -0.843
ENSG00000184787 E024 1.7411359 0.0079338425 1.208377e-01 3.677082e-01 21 44799990 44801283 1294 - 0.301 0.531 1.257
ENSG00000184787 E025 0.9761840 0.3194612533 8.267298e-01 9.372327e-01 21 44801284 44801398 115 - 0.301 0.292 -0.062
ENSG00000184787 E026 23.0230125 0.0005763699 2.919214e-02 1.603308e-01 21 44801706 44801826 121 - 1.448 1.309 -0.480

Help

Please Click HERE to learn more details about the results from DEXseq.