ENSG00000184922

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000586643 ENSG00000184922 No_inf pgKDN_inf FMNL1 protein_coding protein_coding 189.9745 92.52252 211.9709 1.004248 5.730171 1.195902 29.026484 19.405781 27.159104 2.4824402 5.7783077 0.4847373 0.16255833 0.209125 0.126350 -0.082775 0.4408690920 0.0001468517 FALSE TRUE
ENST00000587489 ENSG00000184922 No_inf pgKDN_inf FMNL1 protein_coding protein_coding 189.9745 92.52252 211.9709 1.004248 5.730171 1.195902 24.388096 1.915701 32.479674 1.9157010 6.4165110 4.0765256 0.10628333 0.020450 0.151550 0.131100 0.0064011360 0.0001468517 FALSE TRUE
ENST00000587856 ENSG00000184922 No_inf pgKDN_inf FMNL1 protein_coding retained_intron 189.9745 92.52252 211.9709 1.004248 5.730171 1.195902 8.048437 7.727161 4.903408 0.6341579 0.3313568 -0.6550804 0.05010000 0.083725 0.023175 -0.060550 0.0030381010 0.0001468517 TRUE TRUE
MSTRG.12801.1 ENSG00000184922 No_inf pgKDN_inf FMNL1 protein_coding   189.9745 92.52252 211.9709 1.004248 5.730171 1.195902 64.908483 21.765447 84.742462 1.1591621 0.7279725 1.9605529 0.32274167 0.235200 0.400725 0.165525 0.0001468517 0.0001468517 FALSE TRUE
MSTRG.12801.16 ENSG00000184922 No_inf pgKDN_inf FMNL1 protein_coding   189.9745 92.52252 211.9709 1.004248 5.730171 1.195902 11.767922 11.011229 8.149657 0.6834964 0.8099030 -0.4337046 0.07278333 0.119125 0.038325 -0.080800 0.0012448845 0.0001468517 FALSE TRUE
MSTRG.12801.9 ENSG00000184922 No_inf pgKDN_inf FMNL1 protein_coding   189.9745 92.52252 211.9709 1.004248 5.730171 1.195902 33.225496 19.882551 34.966261 2.9216882 5.9486432 0.8141478 0.18394167 0.215500 0.167450 -0.048050 0.8048428874 0.0001468517 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000184922 E001 0.0000000       17 45221419 45221443 25 +      
ENSG00000184922 E002 0.0000000       17 45221444 45221447 4 +      
ENSG00000184922 E003 0.0000000       17 45221448 45221452 5 +      
ENSG00000184922 E004 0.0000000       17 45221453 45221455 3 +      
ENSG00000184922 E005 0.0000000       17 45221456 45221646 191 +      
ENSG00000184922 E006 0.0000000       17 45221809 45221884 76 +      
ENSG00000184922 E007 0.0000000       17 45221885 45221907 23 +      
ENSG00000184922 E008 11.5804207 1.114170e-03 4.706253e-01 7.382695e-01 17 45221908 45222253 346 + 1.099 1.036 -0.232
ENSG00000184922 E009 28.4972214 7.147944e-04 1.035535e-02 8.213317e-02 17 45230604 45230668 65 + 1.495 1.338 -0.545
ENSG00000184922 E010 26.0742709 6.592766e-03 2.027508e-02 1.280314e-01 17 45230669 45230687 19 + 1.461 1.293 -0.581
ENSG00000184922 E011 0.0000000       17 45231427 45231440 14 +      
ENSG00000184922 E012 2.4576631 5.748691e-03 4.245957e-02 2.007931e-01 17 45232247 45232366 120 + 0.403 0.688 1.338
ENSG00000184922 E013 55.1147444 3.688477e-03 1.185985e-02 8.986360e-02 17 45232367 45232450 84 + 1.766 1.639 -0.429
ENSG00000184922 E014 26.0657968 5.256122e-04 4.284012e-01 7.069278e-01 17 45232451 45232480 30 + 1.427 1.378 -0.168
ENSG00000184922 E015 4.1546839 1.559119e-01 2.532574e-01 5.448004e-01 17 45232862 45233223 362 + 0.609 0.822 0.880
ENSG00000184922 E016 60.3782801 1.450789e-03 4.125987e-02 1.972093e-01 17 45233224 45233297 74 + 1.794 1.704 -0.304
ENSG00000184922 E017 73.8055162 3.321625e-04 4.113211e-02 1.968254e-01 17 45233648 45233731 84 + 1.876 1.799 -0.260
ENSG00000184922 E018 4.6996433 3.738970e-03 1.521105e-04 3.337152e-03 17 45233732 45233883 152 + 0.529 0.975 1.826
ENSG00000184922 E019 3.8386375 4.497973e-02 2.021338e-03 2.576059e-02 17 45233884 45233979 96 + 0.458 0.905 1.911
ENSG00000184922 E020 2.6116801 5.824270e-03 3.368891e-04 6.391057e-03 17 45233980 45234071 92 + 0.306 0.798 2.370
ENSG00000184922 E021 34.3370286 1.146773e-03 4.645668e-02 2.115140e-01 17 45234072 45234079 8 + 1.561 1.449 -0.385
ENSG00000184922 E022 91.2335948 2.069432e-03 8.918556e-03 7.449488e-02 17 45234080 45234200 121 + 1.974 1.873 -0.343
ENSG00000184922 E023 29.3847664 4.925728e-04 1.073696e-12 1.388698e-10 17 45234201 45234831 631 + 1.284 1.676 1.351
ENSG00000184922 E024 11.7613440 2.503360e-02 4.686328e-01 7.368016e-01 17 45234832 45234849 18 + 1.056 1.136 0.288
ENSG00000184922 E025 79.7466084 1.973348e-04 1.619387e-30 9.925002e-28 17 45234850 45236135 1286 + 1.709 2.099 1.311
ENSG00000184922 E026 89.4543486 2.286026e-04 1.416804e-02 1.010499e-01 17 45236136 45236244 109 + 1.961 1.877 -0.283
ENSG00000184922 E027 4.0803832 2.743865e-02 9.689686e-04 1.465582e-02 17 45236245 45236594 350 + 0.483 0.924 1.856
ENSG00000184922 E028 71.5991567 4.068450e-03 5.906182e-02 2.438685e-01 17 45237281 45237357 77 + 1.866 1.779 -0.294
ENSG00000184922 E029 40.8403648 2.409002e-03 6.966415e-02 2.669271e-01 17 45237546 45237639 94 + 1.630 1.533 -0.334
ENSG00000184922 E030 0.0000000       17 45238564 45238638 75 +      
ENSG00000184922 E031 0.0000000       17 45238955 45239065 111 +      
ENSG00000184922 E032 0.8786867 1.786348e-02 4.177697e-03 4.379396e-02 17 45240476 45240625 150 + 0.068 0.493 3.630
ENSG00000184922 E033 8.9341236 4.470329e-02 1.294482e-05 4.259708e-04 17 45240626 45241128 503 + 0.706 1.253 2.048
ENSG00000184922 E034 0.0000000       17 45241129 45241230 102 +      
ENSG00000184922 E035 0.0000000       17 45241231 45241381 151 +      
ENSG00000184922 E036 0.0000000       17 45241382 45241634 253 +      
ENSG00000184922 E037 3.6060134 4.222381e-03 1.548212e-05 4.967356e-04 17 45241635 45241846 212 + 0.373 0.924 2.441
ENSG00000184922 E038 57.1143979 2.417203e-04 3.607977e-01 6.503794e-01 17 45241847 45241973 127 + 1.755 1.716 -0.129
ENSG00000184922 E039 99.8620606 1.634980e-04 2.383134e-01 5.272240e-01 17 45241974 45242146 173 + 1.994 1.956 -0.125
ENSG00000184922 E040 100.6639486 1.052476e-03 1.833666e-01 4.601783e-01 17 45242341 45242465 125 + 2.000 1.955 -0.151
ENSG00000184922 E041 179.2073494 2.199828e-04 5.158848e-01 7.717666e-01 17 45243118 45243320 203 + 2.238 2.223 -0.051
ENSG00000184922 E042 234.1794050 8.603208e-05 9.480594e-02 3.203022e-01 17 45243791 45244025 235 + 2.360 2.326 -0.113
ENSG00000184922 E043 4.1885063 3.360195e-03 1.998306e-03 2.555159e-02 17 45244026 45244175 150 + 0.529 0.905 1.563
ENSG00000184922 E044 101.0049709 1.625604e-04 8.618683e-02 3.041550e-01 17 45244176 45244244 69 + 2.004 1.949 -0.183
ENSG00000184922 E045 94.0278330 6.335197e-04 1.547984e-01 4.203453e-01 17 45244819 45244899 81 + 1.971 1.923 -0.163
ENSG00000184922 E046 90.7932279 2.841217e-03 6.171065e-01 8.341609e-01 17 45244979 45245108 130 + 1.933 1.953 0.065
ENSG00000184922 E047 24.9921367 7.527888e-04 1.547335e-01 4.202456e-01 17 45245253 45245323 71 + 1.361 1.449 0.304
ENSG00000184922 E048 26.9038900 3.341094e-03 3.142716e-01 6.073876e-01 17 45245324 45245325 2 + 1.401 1.465 0.221
ENSG00000184922 E049 117.3749172 1.424508e-04 6.007922e-01 8.252697e-01 17 45245326 45245416 91 + 2.045 2.061 0.053
ENSG00000184922 E050 1.3389624 2.979518e-01 3.935248e-01 6.783982e-01 17 45245619 45245631 13 + 0.305 0.441 0.788
ENSG00000184922 E051 60.3990032 4.911398e-04 6.235465e-01 8.378682e-01 17 45245632 45245634 3 + 1.758 1.779 0.070
ENSG00000184922 E052 143.3340462 3.062786e-04 5.448613e-01 7.910820e-01 17 45245635 45245733 99 + 2.142 2.126 -0.053
ENSG00000184922 E053 170.4919757 9.833066e-05 9.121530e-01 9.720229e-01 17 45245878 45245973 96 + 2.212 2.210 -0.007
ENSG00000184922 E054 4.1298794 6.545587e-02 5.635892e-01 8.028690e-01 17 45245974 45246209 236 + 0.660 0.746 0.356
ENSG00000184922 E055 210.3180403 9.512774e-05 1.920984e-01 4.719100e-01 17 45246210 45246330 121 + 2.312 2.284 -0.093
ENSG00000184922 E056 16.4038527 2.390673e-03 9.584088e-10 8.204892e-08 17 45246331 45246504 174 + 1.008 1.460 1.597
ENSG00000184922 E057 8.7661699 1.559807e-03 1.893487e-06 8.111462e-05 17 45246505 45246604 100 + 0.761 1.208 1.667
ENSG00000184922 E058 18.3294997 7.396217e-04 3.783847e-09 2.911241e-07 17 45246605 45246866 262 + 1.081 1.485 1.418
ENSG00000184922 E059 357.4913025 1.078374e-03 5.936332e-01 8.210753e-01 17 45246867 45247319 453 + 2.535 2.525 -0.034

Help

Please Click HERE to learn more details about the results from DEXseq.