ENSG00000185344

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000330342 ENSG00000185344 No_inf pgKDN_inf ATP6V0A2 protein_coding protein_coding 14.44275 11.662 14.63465 0.513185 0.9727542 0.3273217 4.0920090 2.3641455 5.6680558 0.5446896 1.05542224 1.25798869 0.28248333 0.205300 0.390825 0.185525 0.500888393 0.003396153 FALSE TRUE
ENST00000540368 ENSG00000185344 No_inf pgKDN_inf ATP6V0A2 protein_coding retained_intron 14.44275 11.662 14.63465 0.513185 0.9727542 0.3273217 0.8633114 0.6417961 0.6251513 0.3837876 0.22744847 -0.03732054 0.05900833 0.058300 0.044525 -0.013775 0.981992000 0.003396153 FALSE TRUE
ENST00000543687 ENSG00000185344 No_inf pgKDN_inf ATP6V0A2 protein_coding retained_intron 14.44275 11.662 14.63465 0.513185 0.9727542 0.3273217 0.9156684 1.9471338 0.1655500 0.2801987 0.06859787 -3.47878806 0.07185833 0.166950 0.011250 -0.155700 0.003396153 0.003396153 FALSE FALSE
ENST00000544833 ENSG00000185344 No_inf pgKDN_inf ATP6V0A2 protein_coding protein_coding 14.44275 11.662 14.63465 0.513185 0.9727542 0.3273217 0.6099611 1.1082531 0.3268843 0.4458313 0.14606202 -1.73092176 0.04745833 0.097675 0.022250 -0.075425 0.630389888 0.003396153 FALSE TRUE
ENST00000675260 ENSG00000185344 No_inf pgKDN_inf ATP6V0A2 protein_coding retained_intron 14.44275 11.662 14.63465 0.513185 0.9727542 0.3273217 0.7313884 0.8423606 0.7532243 0.2746466 0.22696004 -0.15935677 0.05225000 0.071900 0.050625 -0.021275 0.901779462 0.003396153 FALSE TRUE
MSTRG.7412.11 ENSG00000185344 No_inf pgKDN_inf ATP6V0A2 protein_coding   14.44275 11.662 14.63465 0.513185 0.9727542 0.3273217 5.0807859 2.8503219 4.7225885 0.6996361 1.09172310 0.72645199 0.33406667 0.240275 0.313325 0.073050 0.835370592 0.003396153 FALSE TRUE
MSTRG.7412.4 ENSG00000185344 No_inf pgKDN_inf ATP6V0A2 protein_coding   14.44275 11.662 14.63465 0.513185 0.9727542 0.3273217 0.3874574 0.0000000 1.1623721 0.0000000 0.98027080 6.87328676 0.02734167 0.000000 0.082025 0.082025 0.626427224 0.003396153 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000185344 E001 0.3730368 0.0167846011 0.3792906087   12 123712353 123712355 3 + 0.078 0.207 1.642
ENSG00000185344 E002 2.9017296 0.1462212810 0.6859195835 0.870292341 12 123712356 123712446 91 + 0.616 0.537 -0.358
ENSG00000185344 E003 2.3947231 0.0068103023 0.0497348912 0.220022245 12 123712447 123712534 88 + 0.616 0.347 -1.358
ENSG00000185344 E004 1.2334163 0.0681098329 0.2516698806 0.542855677 12 123712535 123712582 48 + 0.251 0.452 1.227
ENSG00000185344 E005 1.3432430 0.1456126953 0.7858830022 0.917487334 12 123712583 123712608 26 + 0.338 0.403 0.379
ENSG00000185344 E006 2.1963132 0.0075893670 0.7604911861 0.906346356 12 123712609 123712682 74 + 0.471 0.537 0.320
ENSG00000185344 E007 2.5567867 0.0059148867 0.8565100943 0.949596387 12 123718623 123718701 79 + 0.525 0.574 0.227
ENSG00000185344 E008 0.0000000       12 123718702 123719576 875 +      
ENSG00000185344 E009 5.0873954 0.0028933854 0.4964982815 0.757495679 12 123722351 123722448 98 + 0.799 0.747 -0.206
ENSG00000185344 E010 0.0000000       12 123723210 123724653 1444 +      
ENSG00000185344 E011 2.0582222 0.0110637706 0.6409589721 0.847601716 12 123724654 123724659 6 + 0.499 0.452 -0.232
ENSG00000185344 E012 5.4472242 0.0693257513 0.5363408417 0.785706008 12 123724660 123724791 132 + 0.825 0.770 -0.216
ENSG00000185344 E013 3.8801141 0.0308992904 0.7343721485 0.894588655 12 123726197 123726285 89 + 0.692 0.669 -0.095
ENSG00000185344 E014 3.8488541 0.0038519669 0.0621000267 0.250321588 12 123727783 123727821 39 + 0.756 0.537 -0.943
ENSG00000185344 E015 5.6761253 0.0039752376 0.1202085553 0.366600408 12 123727822 123727909 88 + 0.873 0.723 -0.595
ENSG00000185344 E016 0.7620323 0.0137369352 0.0025355072 0.030443019 12 123730642 123733925 3284 + 0.000 0.452 14.008
ENSG00000185344 E017 7.2320982 0.0049737096 0.0477579549 0.214898844 12 123733926 123734008 83 + 0.974 0.792 -0.697
ENSG00000185344 E018 8.2995037 0.0018046314 0.0102175298 0.081435237 12 123735531 123735624 94 + 1.041 0.813 -0.861
ENSG00000185344 E019 0.4903241 0.0160891606 0.7138003755   12 123735893 123736540 648 + 0.144 0.207 0.642
ENSG00000185344 E020 14.3512958 0.0009762326 0.0086981937 0.073248753 12 123737059 123737271 213 + 1.242 1.068 -0.621
ENSG00000185344 E021 0.2435110 0.0162202262 0.7733862901   12 123737272 123737644 373 + 0.078 0.116 0.642
ENSG00000185344 E022 0.0000000       12 123738959 123739013 55 +      
ENSG00000185344 E023 0.0000000       12 123742029 123742093 65 +      
ENSG00000185344 E024 0.2537079 0.3563345481 0.2036736389   12 123743472 123743784 313 + 0.000 0.207 12.034
ENSG00000185344 E025 11.0412401 0.0012829847 0.4924117723 0.754588337 12 123743785 123743935 151 + 1.085 1.057 -0.103
ENSG00000185344 E026 10.5438846 0.0590373072 0.5970980235 0.823113965 12 123744201 123744337 137 + 1.071 1.033 -0.139
ENSG00000185344 E027 10.5983681 0.0019184309 0.7500291164 0.901457506 12 123744597 123744784 188 + 1.033 1.090 0.208
ENSG00000185344 E028 4.9516763 0.0518108780 0.3285694954 0.621108282 12 123744882 123744972 91 + 0.812 0.697 -0.465
ENSG00000185344 E029 7.9698709 0.0139525961 0.1714923540 0.444035939 12 123747607 123747725 119 + 0.992 0.870 -0.457
ENSG00000185344 E030 0.0000000       12 123747726 123747726 1 +      
ENSG00000185344 E031 11.3699082 0.0012536564 0.1140557124 0.355608445 12 123748575 123748785 211 + 1.125 1.020 -0.381
ENSG00000185344 E032 0.2536433 0.0159227256 0.1396987016   12 123749996 123751109 1114 + 0.000 0.207 12.606
ENSG00000185344 E033 8.5435967 0.0017984250 0.0130296061 0.095532732 12 123751110 123751229 120 + 1.049 0.833 -0.811
ENSG00000185344 E034 7.9974257 0.0022216078 0.3180052022 0.610740973 12 123752283 123752402 120 + 0.974 0.905 -0.261
ENSG00000185344 E035 3.5498091 0.0352117068 0.2968371320 0.590054157 12 123752403 123753116 714 + 0.573 0.747 0.742
ENSG00000185344 E036 0.9909706 0.1671333890 0.3060974506 0.599261676 12 123753991 123754419 429 + 0.201 0.403 1.379
ENSG00000185344 E037 0.0000000       12 123754420 123754537 118 +      
ENSG00000185344 E038 3.8653868 0.0254177865 0.0004831988 0.008505498 12 123754538 123755441 904 + 0.410 0.905 2.166
ENSG00000185344 E039 2.8759575 0.0051217675 0.0002870902 0.005604027 12 123756327 123756814 488 + 0.297 0.813 2.490
ENSG00000185344 E040 14.7530202 0.0009584374 0.5037920372 0.763244936 12 123756815 123756986 172 + 1.156 1.236 0.282
ENSG00000185344 E041 2.7740210 0.0973997703 0.2388803375 0.527872009 12 123757927 123757931 5 + 0.637 0.453 -0.861
ENSG00000185344 E042 109.8683278 0.0095417007 0.0018036481 0.023588254 12 123757932 123761755 3824 + 1.974 2.115 0.472

Help

Please Click HERE to learn more details about the results from DEXseq.