ENSG00000185803

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000527078 ENSG00000185803 No_inf pgKDN_inf SLC52A2 protein_coding protein_coding 71.75434 48.6427 74.74366 1.241456 0.939364 0.6196243 2.592265 0.3950134 6.027954 0.3950134 5.3931384 3.8980182 0.03424167 0.008200 0.079550 0.071350 0.83326102 0.008228062 FALSE  
ENST00000533662 ENSG00000185803 No_inf pgKDN_inf SLC52A2 protein_coding protein_coding 71.75434 48.6427 74.74366 1.241456 0.939364 0.6196243 2.194885 3.4353453 0.826869 0.4879498 0.4038982 -2.0415748 0.03590833 0.071275 0.011000 -0.060275 0.04757367 0.008228062 FALSE  
ENST00000643944 ENSG00000185803 No_inf pgKDN_inf SLC52A2 protein_coding protein_coding 71.75434 48.6427 74.74366 1.241456 0.939364 0.6196243 36.837673 18.0043820 42.411557 1.3410960 2.8560683 1.2356484 0.49480000 0.370750 0.567900 0.197150 0.05742095 0.008228062 FALSE  
ENST00000674870 ENSG00000185803 No_inf pgKDN_inf SLC52A2 protein_coding protein_coding 71.75434 48.6427 74.74366 1.241456 0.939364 0.6196243 17.321107 19.4870728 10.949415 1.5380675 6.3245392 -0.8310867 0.26069167 0.400875 0.147600 -0.253275 0.52886912 0.008228062 FALSE  
ENST00000675280 ENSG00000185803 No_inf pgKDN_inf SLC52A2 protein_coding protein_coding 71.75434 48.6427 74.74366 1.241456 0.939364 0.6196243 1.706141 0.0000000 5.118424 0.0000000 5.1184240 9.0023717 0.02290833 0.000000 0.068725 0.068725 0.89044813 0.008228062 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000185803 E001 0.0000000       8 144333957 144334111 155 +      
ENSG00000185803 E002 0.0000000       8 144354135 144354311 177 +      
ENSG00000185803 E003 0.0000000       8 144354644 144354652 9 +      
ENSG00000185803 E004 0.0000000       8 144354653 144354690 38 +      
ENSG00000185803 E005 0.0000000       8 144354691 144354845 155 +      
ENSG00000185803 E006 0.0000000       8 144354990 144355383 394 +      
ENSG00000185803 E007 0.0000000       8 144357251 144357602 352 +      
ENSG00000185803 E008 0.0000000       8 144358557 144358564 8 +      
ENSG00000185803 E009 0.0000000       8 144358565 144358569 5 +      
ENSG00000185803 E010 0.0000000       8 144358570 144358576 7 +      
ENSG00000185803 E011 0.0000000       8 144358577 144358580 4 +      
ENSG00000185803 E012 0.0000000       8 144358581 144358592 12 +      
ENSG00000185803 E013 0.0000000       8 144358593 144358593 1 +      
ENSG00000185803 E014 0.0000000       8 144358594 144358594 1 +      
ENSG00000185803 E015 0.0000000       8 144358595 144358603 9 +      
ENSG00000185803 E016 0.0000000       8 144358604 144358605 2 +      
ENSG00000185803 E017 0.0000000       8 144358606 144358610 5 +      
ENSG00000185803 E018 0.0000000       8 144358611 144358612 2 +      
ENSG00000185803 E019 0.0000000       8 144358613 144358623 11 +      
ENSG00000185803 E020 0.0000000       8 144358624 144358627 4 +      
ENSG00000185803 E021 0.0000000       8 144358628 144358658 31 +      
ENSG00000185803 E022 0.0000000       8 144358659 144358722 64 +      
ENSG00000185803 E023 0.0000000       8 144358723 144358783 61 +      
ENSG00000185803 E024 0.0000000       8 144358784 144358900 117 +      
ENSG00000185803 E025 0.0000000       8 144358901 144358989 89 +      
ENSG00000185803 E026 0.0000000       8 144358990 144359011 22 +      
ENSG00000185803 E027 0.0000000       8 144359012 144359065 54 +      
ENSG00000185803 E028 0.0000000       8 144359066 144359183 118 +      
ENSG00000185803 E029 0.0000000       8 144359184 144359187 4 +      
ENSG00000185803 E030 0.4811007 0.0253419747 0.485671564   8 144359188 144359233 46 + 0.213 0.109 -1.150
ENSG00000185803 E031 8.8766480 0.0256094203 0.645955851 0.85021097 8 144359234 144359320 87 + 1.011 0.966 -0.167
ENSG00000185803 E032 14.3679657 0.0231001990 0.967803376 0.99349493 8 144359321 144359423 103 + 1.185 1.183 -0.009
ENSG00000185803 E033 0.6342667 0.0142580898 0.008352556 0.07118943 8 144359424 144359521 98 + 0.000 0.384 10.940
ENSG00000185803 E034 42.8327512 0.0003522900 0.295846511 0.58894387 8 144359623 144359726 104 + 1.617 1.665 0.162
ENSG00000185803 E035 34.1323569 0.0004078049 0.035834108 0.18160842 8 144359727 144359747 21 + 1.493 1.599 0.362
ENSG00000185803 E036 92.4993266 0.0002250532 0.712310131 0.88380525 8 144359748 144359940 193 + 1.963 1.975 0.041
ENSG00000185803 E037 73.6558906 0.0007409175 0.577741378 0.81131629 8 144359941 144360114 174 + 1.878 1.860 -0.062
ENSG00000185803 E038 36.7014918 0.0003939671 0.207658168 0.49126396 8 144360115 144360171 57 + 1.599 1.539 -0.206
ENSG00000185803 E039 103.0508007 0.0001864113 0.042397032 0.20060019 8 144360172 144360493 322 + 2.038 1.982 -0.187
ENSG00000185803 E040 0.9968924 0.1164205977 0.100295825 0.33078409 8 144360494 144360589 96 + 0.153 0.433 2.019
ENSG00000185803 E041 19.8416587 0.0138160165 0.872276784 0.95638178 8 144360590 144360600 11 + 1.322 1.309 -0.048
ENSG00000185803 E042 60.5036805 0.0031721934 0.425669982 0.70473120 8 144360601 144360713 113 + 1.770 1.805 0.119
ENSG00000185803 E043 162.3436953 0.0002638041 0.886715435 0.96213985 8 144360803 144361286 484 + 2.209 2.213 0.014

Help

Please Click HERE to learn more details about the results from DEXseq.