ENSG00000186665

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000334461 ENSG00000186665 No_inf pgKDN_inf C17orf58 protein_coding protein_coding 3.323512 4.142768 3.345712 0.07311261 0.09316558 -0.3074544 0.58991712 1.0494062 0.000000 0.6141201 0.00000000 -6.727112 0.16719167 0.251575 0 -0.251575 0.55687916 0.01237348 FALSE FALSE
ENST00000536693 ENSG00000186665 No_inf pgKDN_inf C17orf58 protein_coding retained_intron 3.323512 4.142768 3.345712 0.07311261 0.09316558 -0.3074544 0.77734464 1.6015493 0.000000 0.8126535 0.00000000 -7.332305 0.22050833 0.382325 0 -0.382325 0.17549972 0.01237348 TRUE FALSE
ENST00000580729 ENSG00000186665 No_inf pgKDN_inf C17orf58 protein_coding protein_coding 3.323512 4.142768 3.345712 0.07311261 0.09316558 -0.3074544 0.08646494 0.2593948 0.000000 0.1690558 0.00000000 -4.751650 0.02070833 0.062125 0 -0.062125 0.66317500 0.01237348 FALSE TRUE
MSTRG.13190.3 ENSG00000186665 No_inf pgKDN_inf C17orf58 protein_coding   3.323512 4.142768 3.345712 0.07311261 0.09316558 -0.3074544 1.81291168 1.2324174 3.345712 0.7503396 0.09316558 1.433469 0.56130000 0.303975 1 0.696025 0.01237348 0.01237348 TRUE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000186665 E001 0.2372762 0.0184445829 0.146610659   17 67991099 67991101 3 - 0.199 0.000 -11.415
ENSG00000186665 E002 0.2372762 0.0184445829 0.146610659   17 67991102 67991124 23 - 0.199 0.000 -13.300
ENSG00000186665 E003 0.3559794 0.0187230004 0.052481258   17 67991125 67991129 5 - 0.273 0.000 -13.769
ENSG00000186665 E004 6.9480942 0.0884934087 0.412839650 0.69382069 17 67991130 67991335 206 - 0.815 0.935 0.460
ENSG00000186665 E005 22.4230855 0.0009039492 0.979987546 0.99770971 17 67991336 67992103 768 - 1.364 1.358 -0.021
ENSG00000186665 E006 1.5145926 0.0106405890 0.009600879 0.07829421 17 67992901 67993043 143 - 0.111 0.514 2.958
ENSG00000186665 E007 6.0892563 0.0032112951 0.030206688 0.16347811 17 67993044 67993235 192 - 0.962 0.742 -0.849
ENSG00000186665 E008 2.2226195 0.0078409794 0.809265296 0.92963602 17 67993236 67993423 188 - 0.483 0.514 0.151
ENSG00000186665 E009 1.9859741 0.0086152406 0.386466618 0.67235543 17 67993424 67993984 561 - 0.390 0.514 0.636
ENSG00000186665 E010 0.2537079 0.2698654457 0.441840319   17 67996123 67996469 347 - 0.000 0.150 11.296

Help

Please Click HERE to learn more details about the results from DEXseq.